Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1876 ATGATTCAGCAGCAATTGGTTTCCCATGATTTGACTGGAATTAAAAAGAAGAAAAATGCGAAAAAAGGAAGAACGGAGCCGCCATTGTTATGGAAAGTGTGGAAAACGATGAACGACAAATGGCTTGATGAGCATCCATTTAAAGATGTCAAATTAGATGAGCAGAATGAGGTAATATATGAAACTGCTGAACCATCCTCTGATCTGACTATGCCTTTGCTTAGACACCAAAAGGAATGGTTATCATGGGCTTTGAAACAGGAAAAATCTGAAATTAGAGGTGGAATCCTTGCAGATGATATGGGAATGGGGAAGACTATTGAAGCAATTGCCCTTGTCCTTGCGAAACGTGAGTTAGACCTAATGAATCGTGAGCCAAATGAACCCATATCCTCACCTTCACCAGGTTCATCTAAAGTCCTGCCTGTGATCAAGGGAACACTTGTCATCTGTCCTGTAGTTGCTGTCACACATTGGGTTAATGAGATTGATCAATGCACTTCAAAAGGAAGCACCAAGGTGCTGGTTTATTATGGGGCAAGGAGAGGGAAGAGTGTTGAACAGTTCCCAGAATATGATTTTGTGATAACTACCTACTCTACTGCTGAGTTTGAGTACAGGAAGGATACGATGCATCTTTATGAGGAAGTTAAAAATGTTAGAACAGGAAAAAAATCAAAGCAATTTAAGAAAAAGAAAAAGGAAGTCACCGAAGAACTTGAAGATGTCACACGCAAGGATATCTCACTTATACATGCTGTAAAGTGGCAGCGGATCATATTGGATGAGGCACACAAAATAAAAGATATAGATTCTAAAACTGCAAAAGCAGTTTTTGCCTTAGAGTCTTCCTACAAATGGGCATTAAGTGGCACTCCCATTCTGAGCAGTCTTGAAGAGATGCGATCTCTGGTACGGTTCCTGCAAATAGTTCCTTATTCCTATTACTTGTGCACGCAATGTAATTGCATGACTCTTGATCGTAGCTCTGAAGGATGTCCAAACTGCATCCACCATCCCTTTATTCATTTCTGTTGGTGGAAGAAATATGTTGGCAAACCAATGAAATCTCACGGAAATGACTATTTGAGAAAAAGAGCAAAGATATTGCTTAAGCACAGAGTTCTGAAGAGCATACTACTTAGGCGCACTAAAATGGGCAGAGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAGGGATTGCCTGGATATAAAAGAGCAAGACTATTATGAATCGTTATACAAAGAAAGTCAGGCACAGTTTAACACGTATATCGAAGAAAATACACTGATGAAGAACTTTTACCATTTATTGGACGTCCTCACACGACTACGTCAGGCTCTCTGCCATCCATACCTTGTGGTATATTCTGAAACTGCAACATCAAGAGGTGGAACTACGAATAATAATGCTACTGCTGAACAAGAATGTGGCATTTGTCATGAAGCAACAGAAGATCTTGTGGTTACCTCTTGTGAACATATATTTTGCCAGGCATGCTTGTTGGGACAAGTATCATGCTCCTCGTGCTCTCAATTGCTTACTGATGATTTAACTTCTATAAACGATGTTCATGATCAGCTTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTAAATAGAATTCAGTCCAAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGATCGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTCATTGATTACTCTTTGAACAAGTCTGGAGTCTCTTGCATTCAATTGAATGGATCAATGTCATTGCCTGCTAGGGATGCTGCCATTAAGAGATTTACGGATGATCCAGACTACAAAATTTTTCTCGTGACCTTGAAGGCTGGAGGTGTCGCACTAAATTTGACAGTAGCGTCACATGTTTTTTTTATGGACCCTTGGTGGAACTCCGCTGTGGAGCGTCAGGCTCAAGACAGAATTCATCGAATAGGGCAAAACAAACCTATAAGAATTGTGAGGTTTGTGATAGAGAACACAATAGAAGAGAGACTTTTGAAGCTCCAAGAGAAGAGGGAAGTAGTTTTTGAAGGGACTATAGGTGACTCGTTTGAAGATCTGGAGAAATTGACTGTGGAAGACTTCACATTTCTCTTCCAATAA 2187 0.3978 MIQQQLVSHDLTGIKKKKNAKKGRTEPPLLWKVWKTMNDKWLDEHPFKDVKLDEQNEVIYETAEPSSDLTMPLLRHQKEWLSWALKQEKSEIRGGILADDMGMGKTIEAIALVLAKRELDLMNREPNEPISSPSPGSSKVLPVIKGTLVICPVVAVTHWVNEIDQCTSKGSTKVLVYYGARRGKSVEQFPEYDFVITTYSTAEFEYRKDTMHLYEEVKNVRTGKKSKQFKKKKKEVTEELEDVTRKDISLIHAVKWQRIILDEAHKIKDIDSKTAKAVFALESSYKWALSGTPILSSLEEMRSLVRFLQIVPYSYYLCTQCNCMTLDRSSEGCPNCIHHPFIHFCWWKKYVGKPMKSHGNDYLRKRAKILLKHRVLKSILLRRTKMGRAADLALPPRIVSLRRDCLDIKEQDYYESLYKESQAQFNTYIEENTLMKNFYHLLDVLTRLRQALCHPYLVVYSETATSRGGTTNNNATAEQECGICHEATEDLVVTSCEHIFCQACLLGQVSCSSCSQLLTDDLTSINDVHDQLNKTTIKGFRSSSILNRIQSKNFQTSTKIEALREEIRFMIERDGSAKGIVFSQFTSFLDLIDYSLNKSGVSCIQLNGSMSLPARDAAIKRFTDDPDYKIFLVTLKAGGVALNLTVASHVFFMDPWWNSAVERQAQDRIHRIGQNKPIRIVRFVIENTIEERLLKLQEKREVVFEGTIGDSFEDLEKLTVEDFTFLFQ* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1876 728 Gene3D - 405 727 IPR027417 -
Lan6g1876 728 SUPERFAMILY RING/U-box 473 519 - -
Lan6g1876 728 Coils Coil 226 246 - -
Lan6g1876 728 SMART helicmild6 590 673 IPR001650 -
Lan6g1876 728 SMART ring_2 481 514 IPR001841 -
Lan6g1876 728 Pfam SNF2-related domain 87 458 IPR000330 GO:0005524|GO:0140658
Lan6g1876 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 383 IPR027417 -
Lan6g1876 728 Pfam Helicase conserved C-terminal domain 559 673 IPR001650 -
Lan6g1876 728 Gene3D - 46 403 IPR038718 -
Lan6g1876 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 523 IPR013083 -
Lan6g1876 728 PANTHER - 15 212 - -
Lan6g1876 728 PANTHER - 248 564 - -
Lan6g1876 728 PANTHER - 566 724 - -
Lan6g1876 728 CDD DEXDc_SHPRH-like 73 383 - -
Lan6g1876 728 CDD SF2_C_SNF 557 684 - -
Lan6g1876 728 MobiDBLite consensus disorder prediction 1 23 - -
Lan6g1876 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 555 719 IPR001650 -
Lan6g1876 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 727 IPR027417 -
Lan6g1876 728 ProSiteProfiles Zinc finger RING-type profile. 481 515 IPR001841 -
Lan6g1876 728 SMART ultradead3 69 316 IPR014001 -
Lan6g1876 728 Coils Coil 546 566 - -
Lan6g1876 728 ProSitePatterns Zinc finger RING-type signature. 496 505 IPR017907 -
Lan6g1876 728 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 248 564 - -
Lan6g1876 728 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 566 724 - -
Lan6g1876 728 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 15 212 - -
Lan6g1876 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 86 311 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1876 Lan-Chr6 29841425 29847487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1876 15 727 RAD5 or RAD16-like Gene Family AT1G05120 57.217 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan6g1876 SNF2_N 1.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1876 K15083 - gmx:100786366 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1876 6 29841425 29847487 Lan10g0161 10 1048513 1058096 LSH