Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1862 ATGGATGAAATTGATGTTCCTACACATTTTCTATGCCCCATTTCCCTACAACTTATGAAAGACCCTGTCAAAATTTGCACAGGAATCACTTATGATAGAGAAAACATAGAGAAATGGTTGTTTTCATGCAACAACAAGACATGTCCTGTTACAAAACAATCATTGTTGTTAGACACAAATCTTACACCAAACCACACTCTATGCCGTTTGATCCAATCTTGGTGCACCCTTAATGCTTCTCTTGGTGTTCAACGTATTCCAACTCCAAAGACACCTATTGACAAGGCTCAAATTCTCAAACTCATCAATGAAGCAAAGAGGTTCCCTGATAAACAACTCAAATGCCTTAGAAAGCTTAGATCTTTTGCTTTTGAAGGTGGAAGGAACAAAAATTGTATGGAGTCTACAGGTGCAATAGATTTCTTGGCTTCAACTATGAACTGTATTAACAACATCGAACGAGTGGATTCTACTCTTCTTAGTGAATTGGCTATTGAAGTCTTATTTCATCTTAACCCTTCTGAAGGTATGCTTAAGAAGCTTATAAACAATGAGGGTATTCATTTTCTTGAGTCATTGTTTCAAGTTTTGAGGCTTGGGAATTTTCAATCAAGAGCTTATGCAACTATGCTATTGAAGTCAGCATTTGAGGTGGCTGATCCAATGCAATTGATGAGTGTCAAAACTGTGTTGTTTGTTGAAATAATGAGAGTTCTAAGGGACAAGATTTCAAATCAAGCTTCTAAGGCTGCATTGAAGATCATTGTAGAGCTTTGTCCATGGGGAAGAAACAGAATCAAAGGGGTTGAAGGTGGTGCTGTTTTAGTTCTCATTGAGCTTCTTCTTGATGCACAAGAAAGAAGATTATGTGAACTTATTTTAGCAGCTTTGGATCAACTTTGTGGTTGTGCTGAAGGGAGGGCTGAGTTTTTGAACCATGGGGCAGGTTTGGCTATTGTATCCAAAAAGATTCTAAGGGTTTCTCATGTAGCAAGTGATAAAGGGGTTAGAATTTTGGCCTCTATTTGTAGGTACTCTGCCACTTGTAGAGTTCTTCATGAAATGTTGCAAGTTGGGGTTGTATCTAAGCTATGTTTGGTGCTTCAAGTCAATAGTAGTTTGAAGACAAAGGAGAGAGCTAAAGAGATACTCAAATTGCATTCTATGGTTTGGAAGAACTCTCCTTGTATTCCTTTACCTTTACTATCATCTTATCCATGA 1221 0.3776 MDEIDVPTHFLCPISLQLMKDPVKICTGITYDRENIEKWLFSCNNKTCPVTKQSLLLDTNLTPNHTLCRLIQSWCTLNASLGVQRIPTPKTPIDKAQILKLINEAKRFPDKQLKCLRKLRSFAFEGGRNKNCMESTGAIDFLASTMNCINNIERVDSTLLSELAIEVLFHLNPSEGMLKKLINNEGIHFLESLFQVLRLGNFQSRAYATMLLKSAFEVADPMQLMSVKTVLFVEIMRVLRDKISNQASKAALKIIVELCPWGRNRIKGVEGGAVLVLIELLLDAQERRLCELILAALDQLCGCAEGRAEFLNHGAGLAIVSKKILRVSHVASDKGVRILASICRYSATCRVLHEMLQVGVVSKLCLVLQVNSSLKTKERAKEILKLHSMVWKNSPCIPLPLLSSYP* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1862 406 Gene3D - 97 393 IPR011989 -
Lan6g1862 406 SUPERFAMILY RING/U-box 3 78 - -
Lan6g1862 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lan6g1862 406 Pfam U-box domain 6 76 IPR003613 GO:0004842|GO:0016567
Lan6g1862 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Lan6g1862 406 PANTHER OS11G0573500 PROTEIN 1 406 - -
Lan6g1862 406 SUPERFAMILY ARM repeat 108 384 IPR016024 -
Lan6g1862 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lan6g1862 406 PANTHER WDSAM1 PROTEIN 1 406 IPR045185 GO:0061630
Lan6g1862 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1862 Lan-Chr6 29754332 29755648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1862 2 406 U-box Gene Family AT2G35930 54.768 3.45e-154 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1862 - - gmx:100778012 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1862 6 29754332 29755648 Lan3g0013 3 160135 161665 LSH
Lan6g1862 6 29754332 29755648 Lan8g1576 8 22788628 22790291 PCT
Lan8g1576 8 22788628 22790291 Lan6g1862 6 29754332 29755648 PCT