Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1843 ATGTCTTCTTGGAACAACAACAACAGATACCATTCTGAATCCTCGTATGCTCCTTCTGCCCCATCCTTACCTGATCAACATCAACAACCACAACCCCATTATTCCAACAACAACAACAACAACGCTCCTTCAAATTACCATCATGCCCCTCCTCCTCCTTCTTCAAACTATGGCAGTGGCTATTATGGACAAGTTTCATCTTCATCTTATAGTTTTCCACAAGGCACAAACCCTGATGTTATTAGAACCTTTCAAATGTTTGATAGGGATCAAAGTGGTTTCGTAGATGATAAGGAATTGCAACAAGCTCTTTCTTCTGCTTTTCATAACTTCAATATTGCAACTATTCGTTTTCTTATCTTCTTATTCAAGGATCCTCGTCAACCCCTCAGAATTGGGCCAAAGGAATTTTCTGCTCTATGGAATTGCCTTGGTCAATGGCGAGGCATATTTGAGAGATATGATAAAGATAGGAGTGGGAAAATTGATCCATTAGAACTAAGGGATGCTCTATATGGTATTGGCTATGCAGTACCAGGCTCAGTTCTACAACTTTTGCTTTCCAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATCAAGGGGTTGACTGAAAAATTTAAGGAGAAAGATACTCGTCGAACTGGTTCGGCTAAACTTTCATATGATGAATTTATGTCTATGGTCATTCCTTTCCTTGTATCATATGATTGA 750 0.396 MSSWNNNNRYHSESSYAPSAPSLPDQHQQPQPHYSNNNNNNAPSNYHHAPPPPSSNYGSGYYGQVSSSSYSFPQGTNPDVIRTFQMFDRDQSGFVDDKELQQALSSAFHNFNIATIRFLIFLFKDPRQPLRIGPKEFSALWNCLGQWRGIFERYDKDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVECGMIIKGLTEKFKEKDTRRTGSAKLSYDEFMSMVIPFLVSYD* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1843 249 Pfam EF-hand domain 81 105 IPR002048 GO:0005509
Lan6g1843 249 Pfam EF-hand domain 147 171 IPR002048 GO:0005509
Lan6g1843 249 CDD EFh_PEF_Group_I 79 244 - -
Lan6g1843 249 ProSitePatterns EF-hand calcium-binding domain. 155 167 IPR018247 -
Lan6g1843 249 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Lan6g1843 249 PANTHER CALCIUM-BINDING PROTEIN CML48-RELATED 10 247 IPR044590 -
Lan6g1843 249 ProSiteProfiles EF-hand calcium-binding domain profile. 142 177 IPR002048 GO:0005509
Lan6g1843 249 MobiDBLite consensus disorder prediction 1 60 - -
Lan6g1843 249 Gene3D - 63 246 - -
Lan6g1843 249 PANTHER CALCIUM-BINDING PROTEIN CML48-RELATED 10 247 - -
Lan6g1843 249 MobiDBLite consensus disorder prediction 1 45 - -
Lan6g1843 249 ProSitePatterns EF-hand calcium-binding domain. 88 100 IPR018247 -
Lan6g1843 249 SMART efh_1 146 174 IPR002048 GO:0005509
Lan6g1843 249 SMART efh_1 79 107 IPR002048 GO:0005509
Lan6g1843 249 SUPERFAMILY EF-hand 70 241 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1843 Lan-Chr6 29651453 29654548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1843 52 247 EF-hand Containing Proteins AT5G04170 48.980 3.11e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1843 K13448 - gmx:100499969 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1843 6 29651453 29654548 Lan9g0620 9 8966769 8970836 PCT
Lan9g0620 9 8966769 8970836 Lan6g1843 6 29651453 29654548 PCT