Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1820 ATGAGTGAGATGATGACATCCACCTCCCGGGGTTCCACCTCCTCTTCCAATGGTCTCCTCACCGTTACCATCGCTGATAGCACCACTAAAGACAATGACAATGCTATCGATGATGATGACGACTTGCTCGTCGACCCGGATGATCCTTTTGATATTACTCAAACAAAAAATGTACCTCCCGAGTCTCTCAAGCGTTGGAGGCAAGCTTCATTCGTGTTAAATGCTTCAAGGCGTTTTCGATATACTCTTGACTTGAAGAAGGAAGAGGAGAAAGAGGAAAAGAAATCCATGATTAGAGCCCATGCCCAAGTCATCAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGTGAACTAGTGACAAGTTCATCAGTCACGGCACCAACTCCAGTTGGTAACTATGGAGTTGGCCTTGAACAACTTGTTTCCATGTCTAAGGATCAGAGTGTTTCTGCCTTACAACAATACGGAGGGGTTAAAGGCTTATCAAATTTAGTAAAGTCAACTCCAGACAAAGGCATTAGTGGAGATGACGCTGATCTAATCGAAAGGAAAAATGAATTTGGCACTAATACATATCCTCGCAAAAAGGGCAGAAGTTTCTGGAGGTTTCTATGGGAATCATGGCAAGATCTGACCCTTATAATATTGATTATAGCAGCTGCGGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTTAGAAGAAGGATGGTATGACGGGGGAAGCATTGCTTTCGCAGTTTTGCTTGTCATTGTAGTTACAGCTGTGAGTGATTATCGACAATCCCTGCAGTTTCAGAACTTGAATGCAGAAAAACAAAATATACAACTAGAGGCCATTAGAGGTGGTAGAACTATAAAAATATCAATATTTGATATTGTTGTTGGTGAAGTGGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTTTTAATCACTGGTCACTCACTTGCCATTGATGAATCCAGTATGACCGGTGAAAGCAAGATTGTTCACAAGGATCACAAATCACCCTTTTTGATGTCAGGTTGCAAAGTAGCAGATGGAGTTGGTTCTATGCTGGTAACCGGTGTTGGCATCAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCGTTACAGGTACGATTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGACTTACTGTAGCTGTTCTTGTGCTTGCTGTCCTCTTGGGAAGATACTTTTCCAGCCATACAAAAGATTTAGATGGAAATGTGCAATTTGTTGCTGGAAAGACTAGTATTAGTGATGCAGTAGACGGGGTCATCAAAATTTTTACCATTGCAGTCACAATTGTGGTTGTTGCAGTGCCGGAAGGCTTACCTTTAGCTGTTACCTTAACCTTGGCATACTCGATGCGCAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCGGCTTGCGAAACTATGGGCTCCGCTACAACAATTTGCAGTGATAAAACTGGAACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAACTAAATCCACCAGATGATTCATCAACAATGCATCCAGAAGTTTTATCTCTGACAAATGAGGGCATTGCACAAAATACAACTGGAAATATTTTTGTGCCACAGGATGGTGGAGAGACAGAGGTGACAGGATCTCCTACAGAGAAGGCAATTCTTTCATGGGCGATGAAGTTGGGGATGAAATTTGATGTTATCAGAAAAACTTCAACCATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGGCGGTGTTGCTGTAAAGACGGACTCTGGAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTCCTAGGAGCATGTGATCGATATTTTGATTCAAAAGGTCACTTGCAATCTATTGAAGAAGATAAGGTATTTTTCAAGGATGCTATTGATGATATGGCTGCTCAGAGCCTGCGGTGTGTTGCCATTGCATACAGACCATGTGAATTGGACGAAGTTCCGTCTAAAGAGGAGGACTTAGAGAAGTGGTCCTTACCAGAAAACGACCTTATTTTGCTTGCTATTGTTGGAATAAAGGATCCTTGTCGACCAGGAGTCAAAGAAGCTGTAAGAATATGCACCGATGCTGGCGTTAAGGTACGCATGGTTACGGGGGACAATCTTCAAACTGCAAAGGCAATAGCTTTGGAATGCGGAATACTGAATTCAACTGAAGAAGCTGTTGAGCCAACTATAATTGAAGGAAAGACATTCCGTGAATTATCTGAAACAGAAAGGGAGCAAGTTGCTAAGAAAATAACAGTGATGGGGAGGTCTTCTCCAAATGACAAGCTTTTACTGGTTCAAGCACTTCGTAAAGGGGGTGAAGTTGTTGCTGTCACAGGAGACGGTACCAATGATGCTCCTGCTCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCTCAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTGGATGATAACTTTGCGTCAGTAGTAAAGGTTGTTAGGTGGGGACGTTCCGTATATGCAAATATTCAGAAATTTATACAATTCCAGCTCACTGTTAATGTTGCTGCTCTTGTAATCAATGTGGTAGCAGCGATATCTTCTGGTGATGTTCCTTTAAACGCAGTACAACTGTTGTGGGTAAACCTCATCATGGATACACTTGGGGCACTTGCGCTCGCTACGGAACCACCAACAGACAACCTTATGCACAGATCACCAGTTGGCCGAAGAGAACCTCTTATTACAAATATAATGTGGAGGAACTTGCTAGTACAGGCTCTCTATCAAGTGGCTATTCTTCTGGTTCTTAATTTTGGTGGTGAAAGTATCCTAAGTAATCATCATTCTAAAGCCCAAACCATACAAGTGAAAAATACTCTAATATTCAATACATTCGTCCTGTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGAGGAAATGAATGTGTTCAGGGGAGTGACTAAGAATCGTCTCTTTGTGGGAATTGTTGGAGTCACATTTGTGCTTCAGATAATCATCATTGAATTCCTGGGAAAGTTCACAACGACAGTGAGGCTTGATTGGAAGCTGTGGCTTGCTTCTCTTTGTATTGGGATTGTGAGTTGGCCTCTTGCTATGATTGGAAAATTGATTCCAGTTCCAAAAACACCATTGTCCCGCTCCTTGAAGAAGCAACTCATGCGATTCAAGAGATCTCGTGGTGGTGGTGCTGCTGCTCCATAG 3288 0.4249 MSEMMTSTSRGSTSSSNGLLTVTIADSTTKDNDNAIDDDDDLLVDPDDPFDITQTKNVPPESLKRWRQASFVLNASRRFRYTLDLKKEEEKEEKKSMIRAHAQVIRAALLFRLAGERELVTSSSVTAPTPVGNYGVGLEQLVSMSKDQSVSALQQYGGVKGLSNLVKSTPDKGISGDDADLIERKNEFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAAVSLVLGIKTEGLEEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEAIRGGRTIKISIFDIVVGEVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDHKSPFLMSGCKVADGVGSMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVLVLAVLLGRYFSSHTKDLDGNVQFVAGKTSISDAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDSSTMHPEVLSLTNEGIAQNTTGNIFVPQDGGETEVTGSPTEKAILSWAMKLGMKFDVIRKTSTILHVFPFNSEKKRGGVAVKTDSGVHIHWKGAAEIVLGACDRYFDSKGHLQSIEEDKVFFKDAIDDMAAQSLRCVAIAYRPCELDEVPSKEEDLEKWSLPENDLILLAIVGIKDPCRPGVKEAVRICTDAGVKVRMVTGDNLQTAKAIALECGILNSTEEAVEPTIIEGKTFRELSETEREQVAKKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGISGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDNLMHRSPVGRREPLITNIMWRNLLVQALYQVAILLVLNFGGESILSNHHSKAQTIQVKNTLIFNTFVLCQIFNEFNARKPEEMNVFRGVTKNRLFVGIVGVTFVLQIIIIEFLGKFTTTVRLDWKLWLASLCIGIVSWPLAMIGKLIPVPKTPLSRSLKKQLMRFKRSRGGGAAAP* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1820 1095 Gene3D - 207 1062 - -
Lan6g1820 1095 PANTHER CATION TRANSPORTING ATPASE 47 1079 - -
Lan6g1820 1095 SMART Cation_ATPase_N_a_2 155 229 IPR004014 -
Lan6g1820 1095 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 436 529 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan6g1820 1095 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 772 885 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan6g1820 1095 PRINTS Sodium/potassium-transporting ATPase signature 242 262 - -
Lan6g1820 1095 PRINTS Sodium/potassium-transporting ATPase signature 492 513 - -
Lan6g1820 1095 PRINTS Sodium/potassium-transporting ATPase signature 617 635 - -
Lan6g1820 1095 Pfam E1-E2 ATPase 277 477 - -
Lan6g1820 1095 Pfam haloacid dehalogenase-like hydrolase 496 819 - -
Lan6g1820 1095 MobiDBLite consensus disorder prediction 25 57 - -
Lan6g1820 1095 PRINTS P-type cation-transporting ATPase superfamily signature 323 337 - -
Lan6g1820 1095 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Lan6g1820 1095 PRINTS P-type cation-transporting ATPase superfamily signature 698 709 - -
Lan6g1820 1095 PRINTS P-type cation-transporting ATPase superfamily signature 720 730 - -
Lan6g1820 1095 PRINTS P-type cation-transporting ATPase superfamily signature 805 824 - -
Lan6g1820 1095 PRINTS P-type cation-transporting ATPase superfamily signature 829 841 - -
Lan6g1820 1095 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 506 702 IPR023299 GO:0000166
Lan6g1820 1095 SFLD p-type atpase 481 857 IPR044492 -
Lan6g1820 1095 Gene3D - 181 375 - -
Lan6g1820 1095 SUPERFAMILY Calcium ATPase, transduction domain A 278 372 IPR008250 -
Lan6g1820 1095 Pfam Cation transporter/ATPase, N-terminus 157 224 IPR004014 -
Lan6g1820 1095 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 145 1068 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lan6g1820 1095 MobiDBLite consensus disorder prediction 33 47 - -
Lan6g1820 1095 Gene3D - 496 850 IPR023214 -
Lan6g1820 1095 Gene3D - 509 705 IPR023299 GO:0000166
Lan6g1820 1095 ProSitePatterns E1-E2 ATPases phosphorylation site. 501 507 IPR018303 -
Lan6g1820 1095 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 90 IPR024750 GO:0005516
Lan6g1820 1095 Gene3D - 60 112 - -
Lan6g1820 1095 SUPERFAMILY HAD-like 497 910 IPR036412 -
Lan6g1820 1095 Pfam Cation transporting ATPase, C-terminus 890 1066 IPR006068 -
Lan6g1820 1095 CDD P-type_ATPase_Ca_PMCA-like 183 938 - -
Lan6g1820 1095 SFLD Haloacid Dehalogenase 481 857 - -
Lan6g1820 1095 PANTHER CALCIUM-TRANSPORTING ATPASE 47 1079 - -
Lan6g1820 1095 SUPERFAMILY Calcium ATPase, transmembrane domain M 156 1068 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1820 Lan-Chr6 29510031 29518177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1820 12 1088 Primary Pumps ATPases AT3G21180 76.796 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1820 K01537 - gmx:100817367 1777.68