Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1816 ATGAACACCATAACCATGTTCACTAAGTTTCTTCAAATTCACACTACAATTCCCTTCCTCCCACTTCCTCCTTTTCCACATCACAACAACAGTAACAACTCCTTCCTCATATTCAAACACAACCCCCAATTTCAATTTCAATTCCATTATTATGAAACAAGAAGAAGAAGAAGAAGACGACGAAACGGTCACTGTTGTCGTTGTGACGGTTCCTCTGAATTGGAAGTGCAGGAAGCTCGAAAAGCCGTTTCAACATTTCTTCAGGAATTGGGAGTGTCAGAGGAAGATTCGATATCCATCGCGTCAAAGTCGCCTTCTTATTTAAACATGTTGATGGATGGGGTTAGGGATTTGGATCAGTTATCATCCATTATCCAACAAGAAGAAGAAGAAGAAGAAGAACAAAACCTCAAAGATAAAATTATTCATATCGCTACTCAGAAAGGTGACAAGGGGAAAGTTGCATATCTAGAAAGTTTAGGCTTCACTCTCTCTTCATCCATGAATGTTGCACGGTATCTATCTGCTGAGACGCTACCATCTCTCATTCATAAGGTTACTTCTATGAAGCTACTCTTTTTCAATTCTCATTCTCATCATAATCAAGATTTCCTTATCAAAAACATTCGCCGTATGATGCTCTATTTATCCATTTCAATTGATGATGATCTCCAACACACTTTGTCCTTCTTTGCAAAGGTTGAAGCAAGACGTGGTGGTCTGAAAATGTTATCTTCCAAAGATTCAGCTTTCAATTATTTAATTGAATCATTTCCTCGTCTACTTTTGTTATCAGTAGATGACCACATGATGCATACCGTGGAATTTCTTGAGAATATTGGAATCCCTAGAGTTCACATCTCATATATGATACTGTGTTTTCCTCCCATTCTGCTTTGGAATCTCCGAGTCCTCAAAAATAGAGTCCTAGCCCTGAAGGAGATTGATTTGGTGGATGGTGATTATATCAGGTTACTGCTAAATTATCCTTGGGTTCTATCGACAAGCATTCAAGAGAACTATGAGGAGGTCCTTGCCTTTTTTCATACTGAAAATATCCCCAAGACATTGCTCGACCGTGCAATCCAAAGCCAACCTCATTTATTGGCTTGTTCAACTAGCAAGCTGAAGTTGATGGTAGATCAGTTTGCCGAACTAGGAGTTATAAGCAAAAGGTTGGATCGGGTTATTACTAAAAGTCCTCAGCTACTGCTACTGAATCTGAAAGACTTCCTAAAGATTGTTCTGTTCTTTGAAAATATGGGGTTCGATGGAGAAAATATTGGGAGAATTCTTGCTCGTTGCCCTGAGATTTTTGCCACTAGCATTGATAAAACTCTGCAGAGGAAAATTGAGTTCCTTTGTGGGATTGGTGTTTCTGAAACTTACCTTGCTAGGGTTATTAGGAAGTATCCAGAGTTACTCGTTTATGACACTGATAACACTTTACCACATCGGATTATGTACCTTATGAAGTTAGGGCTTTCAGAGAAAGACATTGCATTTATGGTACGCACATTTTCTCCTCTCCTCGGGTACAGTATAGAAGAGGTTCTGAGGCCAAAAATAGAATTCCTAGTTAACTCAATGGGGAGGCCAGTAAGAGATGTGGTGGGGTACCCTAGGTATTTTAGCTATTCATTAGAAAAGAAGATAAAGCCAAGGTATTGGGTGCTCAAAGAAAGAAATATTAAGTGCAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCTGCTGAATTTATGTGTCATCTGGCTTCTCATGATGGGTTGTAA 1782 0.39 MNTITMFTKFLQIHTTIPFLPLPPFPHHNNSNNSFLIFKHNPQFQFQFHYYETRRRRRRRRNGHCCRCDGSSELEVQEARKAVSTFLQELGVSEEDSISIASKSPSYLNMLMDGVRDLDQLSSIIQQEEEEEEEQNLKDKIIHIATQKGDKGKVAYLESLGFTLSSSMNVARYLSAETLPSLIHKVTSMKLLFFNSHSHHNQDFLIKNIRRMMLYLSISIDDDLQHTLSFFAKVEARRGGLKMLSSKDSAFNYLIESFPRLLLLSVDDHMMHTVEFLENIGIPRVHISYMILCFPPILLWNLRVLKNRVLALKEIDLVDGDYIRLLLNYPWVLSTSIQENYEEVLAFFHTENIPKTLLDRAIQSQPHLLACSTSKLKLMVDQFAELGVISKRLDRVITKSPQLLLLNLKDFLKIVLFFENMGFDGENIGRILARCPEIFATSIDKTLQRKIEFLCGIGVSETYLARVIRKYPELLVYDTDNTLPHRIMYLMKLGLSEKDIAFMVRTFSPLLGYSIEEVLRPKIEFLVNSMGRPVRDVVGYPRYFSYSLEKKIKPRYWVLKERNIKCSLKDMLGKNDEEFAAEFMCHLASHDGL* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1816 593 PANTHER CGI-12 PROTEIN-RELATED 42 408 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 PANTHER CGI-12 PROTEIN-RELATED 412 584 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 501 533 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 465 496 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 359 389 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 394 424 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 323 354 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 534 565 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 288 318 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 SMART mt_12 429 460 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 Pfam mTERF 78 308 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 Pfam mTERF 274 580 IPR003690 GO:0003690|GO:0006355
Lan6g1816 593 Coils Coil 118 138 - -
Lan6g1816 593 Gene3D Transcription termination factor 3, mitochondrial 374 589 IPR038538 -
Lan6g1816 593 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 42 408 - -
Lan6g1816 593 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 412 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1816 Lan-Chr6 29482457 29486177 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lan6g1816 mTERF 3.1e-90 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1816 K15032 - gmx:100802127 682.174