Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1786 ATGCTTGTGATTTCGTTTTCAATTTCTACCTTTTTGTTGCTGAAAATTGATCTATCAGTTTTGATCAGAATTCTAGGGTTTTTGTTGAGAATTTGTGAATTTTCAGCTGAGTATCGTGCTTGTTCAAATATGAGTAGCTTAGCTGAGAGGCTTCGTGTAAGATCAGATCGCAAGCCAATCTATAATATAGACGAGTCAGATGATGATGCTGATTTTTTGCCTCAAAAACATGGGACAACTCAGGAAAAGTTTGAGAGGATAGTCAGAAGTGATGCGAAAGAGGATTCGTGTCAAGCTTGTGGCGAAAGCGGAGATCTTGTGAGTTGTGAAACATGCACTTATGCTTTCCATTCTCGTTGTATACTTCAACCATTTAAAAGACCCCTTTCAGACAACTGGAAGTGCCCCGAATGTGTTAGCCCACTTAACGATATTGATAAGATATTAGAATATGAGACTTGTCCTACTGTAGCTGGTGAAAGTGATGCCACTAAATCGGGGCCAAGCCAGAAGTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATACTTGCACTGCAGATGGGTGCCAGAGGAAGAGTTTCTGAAAGCTTTCAAGAATTATCCTCGTCTAAAGACCAAAATAAATAACTTCCATCGTCAAATGGCATCGGCGAATACTTCTGAAGAAGACTTTGTTGCCATTCGACCTGAATGGACTACGGTTGATCGAATACTTGCTTGCAGGGGTAATGAGGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTGCATATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTGCATTTCAGCTGGAAATAGATAGATTCAAGAGATTTCAGTCTAGGTCAAGGAAAAAGTCTTCTACTAAGCAAAAAAGCAGTGATAATGATGATGCTGAGTTTAAGCAGCAGAAAGAATTTCAACAGTTTGAACATAGCCCTGAGTTTCTTTCAGGGGGTTCATTACATCCGTATCAGCTTGAAGGGTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTCTTGAAGAGAACATTTCTCCACATCTAGTGGTTGCTCCACTCTCAACTTTGCGAAACTGGGAACGGGAATTTGCTACTTGGGCACCCCAAATGAATGTTGTTATGTATTTTGGATCTGCTCAAGCTCGTTCTGTTATAAGACAGTATGAGTTTTACTTTCCAAAGAAGCAGGAGAAGATCAAGAAAACAAAATATGGACAAACAGTTAACAAAAGCAAGCAAGACAGGGTTAAGTTTGATGTCCTTTTGACATCCTATGAGATGATTAACCTTGATACAGCATCATTGAAATCAATAAAGTGGCAGTGCATGATAGTGGATGAAGGTCATCGTCTTAAAAACAAGGATTCCAAATTATTTTCTTCATTGAAGCAATATTCTACAAGGCATCGGGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGACGAACTTTTTATGCTTATGCACTTTCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAAGATATTAATCAAGAGGAACAGGTCTTGCGGCTTCATAAAATGTTGGCCCCACATCTCCTTCGAAGAGTGAAGAAAGATGTCATGACAGAACTACCTCCTAAAAAGGAACTCATTTTACGTGTTGAATTAAGCAGCAAGCAGAAAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGCCGTGGTGGCGCGCAAATTTCTCTCATTAATGTTGTTATGGAACTGCGTAAGCTCTGCTGTCATCCCTACATGTTTGAAGGAGCTCAACCACATCTTGACGATACAGAAGAAGCATTCAAACAGCTGCTGGAGTCTTCGGGTAAGTTGCAATTGTTGGACAAGATAATGACGAAGCTTAAAGAGCAAGGACATAGAGTCCTCGTATATACCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTATTGTTCTTACAAGAATTGGTATTATGAAAGAATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATAGATTTAATGCCAAAAATTCTACAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGTGGCATTGGGATAAACCTTGCAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCACATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTTGGACAGACTAACAAGGTGATGATATTTAGGCTAATAACAAGAGGAACAATTGAGGAAAGGATGATGCAGTTGACAAAGAAGAAAATGGTGTTAGAACACCTAGTAGTAGGAAAGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTGAACGATATCATAAGCTATGGTTCAAAGGAGTTATTTGCTGATGAGAATGATGAGGCAGGCAAATCTCGCCAAATTCATTACGATGATGCTGCCATAGACAGATTGCTGGATCGTGATCAAGTTGGACAAGAAGAGGCTAATTTGGACAATGAAGATGAAAATGGATTTTTGAAGGCCTTTAAGGTGGCGAATTTCGAGTACATTGATGAAGTTGAGGCTGCAAAAGAGGAGGCCCGAAAAAGAGAAATGGAGAATAAATCTTCAGCGAGCAGCTCTACAAGAGCAAATTACTGGGAAGAGTTGTTAGGAGACAAATATCAAGAGCATAAAGTGGATGAGCTTAATGCCTTGGGAAAAGGGAAGCGAAGCCGCAATAAATGGCAGGGGGATGATTTTGCTGCTCCTGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCGGATCCGGATCTTAGTGATGACTCTTCAAATTCAACTGGAACAGTTTCTGCTAGAAGGCCTCACAAGAGGAAAGTTCATGCAAATAGCTCAGAGCCACTTCCTTTAATGGAAGGTGAAGGAAGATCACTCAGAGTACTTGGTTTTAATCAAAATCACAGGGCTGCTTTTGTTCAAATTTTGATGAGGTTTGGGGTAGGTGATTATGATTGGAAAGAGTTTACTTCTCGCATGAAACAGAAGAGTTATGAAGAAATCAGAGATTACGGAACCCTTTTCTTGTCTCATATTGCTGATGATATAACTGATTCCCCAACTTTCTCAGATGGTGTTCCAAAAGAAGGACTTCGAATACCTGATATACTTGTTAGGATTGCAGTTCTGCTTTTGATAAGGGAGAAAGTGAAGTATGCCTCAGAAAATCCTGGAACTCCACTCTTTTCAGATGACATCGTAGCACGCTATCCAGGTTTGAAGTGTGTAAAGACATGGAAGGAGAAGCATGATGTAATGTTACTGCAGGCTGTGTTGAAGCACGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGAGTCTGAAGATTCAGGAGGTTATCTGTCAGGAGATGAATATTCCTATAGTAAAGATACCTGTTCCTGGACAAGTTGGTGCTCAAGTGCAAAATAATACAAATGTGATAAATTTGGAATCTTCCGGCAATCAATCTAGGGAAAATGGTCAAGGTGACATAGCAGCTGATGGTGCAAATATAACAAATGCGGATTCTACCTACAACCAATCTAGGGAAAATGGTGAGAGTGGCATAGCAGCTGATGGTGCACAAGGTTCTGGTGGTACTAAGAACCAAACACAGTTATTGCAAGAGACCTCAATGTTATATCAATATAGAGACATGCAGAGAAAACAGATTGAGTTTGTAAAAAGGAGGGTTCAACTCTTGGAGAAAGGTGTCAATGCCGAGTATCAGAAAGAATACTTTAGTGATCCAAATGCAACTGTGACCAATGAAGAACATAAAAGTGAACCTATGACTACTAATTTACCAAGTTATACATCGGGGGATACTTTGACCAAAATGATTGATCAACTTCCTCAAGTAGAATCAATAGCTTCTGAAGATTTTTCTTTTGCTGCTGGTGATTATGGTCCAAACCGGTCGGAATTAGTTCATAATTACAACAAGATGTGTAAGGTAGTGAATGGAAGCACCATGGATATAGCTCAAGCATATTTGGCTAGAGATCCAACAGAAGTCAATGTTATGAAGAACTTGCATCAACTTGAAACTATTTGTGAAGATGTCAAAAGAATACTAACACCTATTGCAGAGAATCCTGGTAATGGTGTCTGA 4230 0.396 MLVISFSISTFLLLKIDLSVLIRILGFLLRICEFSAEYRACSNMSSLAERLRVRSDRKPIYNIDESDDDADFLPQKHGTTQEKFERIVRSDAKEDSCQACGESGDLVSCETCTYAFHSRCILQPFKRPLSDNWKCPECVSPLNDIDKILEYETCPTVAGESDATKSGPSQKFVKQYLVKWKGLSYLHCRWVPEEEFLKAFKNYPRLKTKINNFHRQMASANTSEEDFVAIRPEWTTVDRILACRGNEEKEYLVKWKELAYDECHWELESDISAFQLEIDRFKRFQSRSRKKSSTKQKSSDNDDAEFKQQKEFQQFEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLEENISPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAQARSVIRQYEFYFPKKQEKIKKTKYGQTVNKSKQDRVKFDVLLTSYEMINLDTASLKSIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQVLRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSSKQKEYYKAILTRNYEILTRRGGAQISLINVVMELRKLCCHPYMFEGAQPHLDDTEEAFKQLLESSGKLQLLDKIMTKLKEQGHRVLVYTQFQHMLDLLEDYCSYKNWYYERIDGKVGGAERQIRIDRFNAKNSTRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQLTKKKMVLEHLVVGKLKAQNINQEELNDIISYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVGQEEANLDNEDENGFLKAFKVANFEYIDEVEAAKEEARKREMENKSSASSSTRANYWEELLGDKYQEHKVDELNALGKGKRSRNKWQGDDFAAPEDVSSDGEDDNYEADPDLSDDSSNSTGTVSARRPHKRKVHANSSEPLPLMEGEGRSLRVLGFNQNHRAAFVQILMRFGVGDYDWKEFTSRMKQKSYEEIRDYGTLFLSHIADDITDSPTFSDGVPKEGLRIPDILVRIAVLLLIREKVKYASENPGTPLFSDDIVARYPGLKCVKTWKEKHDVMLLQAVLKHGYGRWQAIVDDKSLKIQEVICQEMNIPIVKIPVPGQVGAQVQNNTNVINLESSGNQSRENGQGDIAADGANITNADSTYNQSRENGESGIAADGAQGSGGTKNQTQLLQETSMLYQYRDMQRKQIEFVKRRVQLLEKGVNAEYQKEYFSDPNATVTNEEHKSEPMTTNLPSYTSGDTLTKMIDQLPQVESIASEDFSFAAGDYGPNRSELVHNYNKMCKVVNGSTMDIAQAYLARDPTEVNVMKNLHQLETICEDVKRILTPIAENPGNGV* 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1786 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 818 IPR027417 -
Lan6g1786 1409 Gene3D - 570 794 IPR027417 -
Lan6g1786 1409 SMART DUF1087_2 883 948 IPR009463 -
Lan6g1786 1409 SMART DUF1086_2 958 1111 IPR009462 GO:0003677|GO:0006338
Lan6g1786 1409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 142 IPR013083 -
Lan6g1786 1409 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 48 1110 - -
Lan6g1786 1409 Pfam Helicase conserved C-terminal domain 650 763 IPR001650 -
Lan6g1786 1409 SMART helicmild6 679 763 IPR001650 -
Lan6g1786 1409 Pfam CHD subfamily II, DUF1087 884 936 IPR009463 -
Lan6g1786 1409 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 48 1110 - -
Lan6g1786 1409 SUPERFAMILY Chromo domain-like 224 284 IPR016197 -
Lan6g1786 1409 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 525 IPR014001 -
Lan6g1786 1409 SMART ultradead3 323 536 IPR014001 -
Lan6g1786 1409 MobiDBLite consensus disorder prediction 947 963 - -
Lan6g1786 1409 Coils Coil 530 550 - -
Lan6g1786 1409 MobiDBLite consensus disorder prediction 931 996 - -
Lan6g1786 1409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 560 IPR027417 -
Lan6g1786 1409 MobiDBLite consensus disorder prediction 1189 1240 - -
Lan6g1786 1409 Gene3D - 143 218 - -
Lan6g1786 1409 ProSiteProfiles Zinc finger PHD-type profile. 94 141 IPR019787 -
Lan6g1786 1409 ProSiteProfiles Chromo and chromo shadow domain profile. 143 225 IPR000953 -
Lan6g1786 1409 CDD CD1_tandem 141 215 - -
Lan6g1786 1409 ProSiteProfiles Chromo and chromo shadow domain profile. 235 296 IPR000953 -
Lan6g1786 1409 ProSitePatterns Zinc finger PHD-type signature. 97 138 IPR019786 -
Lan6g1786 1409 Pfam SNF2-related domain 347 627 IPR000330 GO:0005524|GO:0140658
Lan6g1786 1409 CDD SF2_C_SNF 648 774 - -
Lan6g1786 1409 CDD CD2_tandem 233 283 - -
Lan6g1786 1409 Pfam CHD subfamily II, SANT-like domain 976 1108 IPR009462 GO:0003677|GO:0006338
Lan6g1786 1409 Pfam Chromo (CHRromatin Organisation MOdifier) domain 169 202 IPR023780 -
Lan6g1786 1409 Pfam Chromo (CHRromatin Organisation MOdifier) domain 236 283 IPR023780 -
Lan6g1786 1409 MobiDBLite consensus disorder prediction 1209 1225 - -
Lan6g1786 1409 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 653 814 IPR001650 -
Lan6g1786 1409 SMART chromo_7 233 286 IPR000953 -
Lan6g1786 1409 SMART chromo_7 142 208 IPR000953 -
Lan6g1786 1409 Gene3D - 1078 1282 - -
Lan6g1786 1409 Gene3D - 319 569 IPR038718 -
Lan6g1786 1409 Gene3D - 221 283 - -
Lan6g1786 1409 SUPERFAMILY Chromo domain-like 109 220 IPR016197 -
Lan6g1786 1409 SMART PHD_3 96 139 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1786 Lan-Chr6 29176737 29196652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1786 349 790 RAD5 or RAD16-like Gene Family AT1G02670 24.172 4.71e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan6g1786 SNF2_N 1.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1786 K11643 - gmx:100790230 2085.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1786 6 29176737 29196652 Lan3g1721 3 29726038 29747358 LSH
Lan6g1786 6 29176737 29196652 Lan15g1056 15 19585017 19606496 PCT
Lan6g1786 6 29176737 29196652 Lan3g1104 3 23384526 23402641 PCT
Lan15g1056 15 19585017 19606496 Lan6g1786 6 29176737 29196652 PCT
Lan3g1104 3 23384526 23402641 Lan6g1786 6 29176737 29196652 PCT