Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1784 ATGGCATACCATAATCAAAATCATGATCTATCCCAACAAGAATTCTCACTTCACCATTTCACAAACCAATCCAACTCCACACCCAATTGGCTCAACAACAACACAACCACCTCCACCAACACCGTCTCCGCAGCCGCGAATTCATCGGCACAATGGAAGGCAGAGATATTGGGACACCCGTTGTATGAGCAGCTTCTGTCAGCACATGTGGGGTGCTTAAGGATCGCAACGCCGGTGGATCAGTTGCCGAGGATTGATGCTCAGTTGGCTCAGTCGGAGGATGTGGTGGCTAAGTACTCCAACACCTTTGGACCCAACATGCTTGGTGCTCACAAAGAACTTGACCAATTCATGTCACACTATGTTTTATTGCTCTGTTCCTTCAAAGAACAACTGCAACAACATGTCAGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCTTTACAGACTCTAACAGGAGTTTCACCAGGAGAAGGTACAGGTGCAACGATGTCCGATGACGAAGACGACCAAGTAGAAAGCGATGCGAATATTTTCGATGTTAGTTTGGATGGAACAGATAACATGGGATTTGGCCCTCTTGTTCCTACAGAGAATGAAAGGTCCCTTATGGAACGTGTAAGACAAGAACTAAAGCATGAATTGAAACATGGCTATAAGGAGAAAATTGTGGACATAAGAGAAGAGATTCTGCGAAAGCGCCGAGCCGGAAAACTTCCTGGTGACACAACCTCTGTCCTCAAAGCATGGTGGCAATCACATTCCAAATGGCCTTATCCTACAGAGGAAGATAAGGCAAGATTGGTGCAGGAAACTGGTTTGCAGTTAAAGCAGATTAATAATTGGTTCATCAATCAAAGGAAGAGGAATTGGCACAGCAATGCTTCAACTTCTACTGTCTTGAAGAGCAAGCGTAAACGGGGATAA 945 0.4529 MAYHNQNHDLSQQEFSLHHFTNQSNSTPNWLNNNTTTSTNTVSAAANSSAQWKAEILGHPLYEQLLSAHVGCLRIATPVDQLPRIDAQLAQSEDVVAKYSNTFGPNMLGAHKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQTLTGVSPGEGTGATMSDDEDDQVESDANIFDVSLDGTDNMGFGPLVPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNASTSTVLKSKRKRG* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1784 314 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Lan6g1784 314 Pfam ELK domain 216 237 IPR005539 GO:0003677
Lan6g1784 314 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 3 19 313 - -
Lan6g1784 314 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 19 313 - -
Lan6g1784 314 SUPERFAMILY Homeodomain-like 238 301 IPR009057 -
Lan6g1784 314 CDD homeodomain 239 300 IPR001356 GO:0003677
Lan6g1784 314 Gene3D - 235 309 - -
Lan6g1784 314 Pfam KNOX1 domain 53 93 IPR005540 GO:0003677|GO:0005634
Lan6g1784 314 SMART HOX_1 238 303 IPR001356 GO:0003677
Lan6g1784 314 Pfam KNOX2 domain 108 158 IPR005541 GO:0003677|GO:0005634
Lan6g1784 314 SMART KNOX2_2 104 159 IPR005541 GO:0003677|GO:0005634
Lan6g1784 314 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Lan6g1784 314 SMART ELK_2 216 237 IPR005539 GO:0003677
Lan6g1784 314 SMART KNOX1_2 50 94 IPR005540 GO:0003677|GO:0005634
Lan6g1784 314 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1784 Lan-Chr6 29143383 29148472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1784 43 313 Homeobox Transcription Factor Family AT5G25220 83.453 5.60e-169 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan6g1784 KNOX2 4.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1784 - - cam:101494477 489.574