Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1781 ATGGGGAAACCAAATGGGAAAAAGAAGGATACAGAAAGTCCTAAGGCTATTAATAAGGAAAGTCCAAAGGCTATAGGTAAAGTTGGTAATAACAAGGTTTCTTCAAAACTAGCTTTGGATGATGACACTGCAATGTTCATCAACATGTCACATGAGCTTAGAGAAGAGGGTCACCGGTTATTCCATAAAAAAGATCTGGAAGGCGCTATGTCGAAGTATGTAAAAGCCCTCAAGTTACTCCCTAAGAGTCATATTGATGTCGCGCAATTGCGCACCGATATGGCTGGTTGTTATATGCAATTAGGCCTTGGTGAGTATCCTAAAGCAATTAATGAGTGTAATTTGGCATTGGAGGTATCGCCTAGGTATAGTAAGGCGCTTTTGAAACGAGCGAAATGCTATGAGTCTTTGAATCGGTTGGATTTGGCGATGAGGGATGTGAGGATTGTTTTGAACACAGAGCCGAATAATGTGGCCGCATTGGAGGTGCTTGATAGCTTGAGGAATACAATGGATGAGAAAGGGATTGTGATTGATGAGACAGAGATTGCGCTGGCGACTATGCAGGAGGCGCCTTGTGCGCGTTTGAGGAAAGTGGTTAGAGAGAAGTTGAAGAAGAAAGGGCACAAAAGTGAAGTTGTCGAGGACAATGTGAATTCAAATGCGAAGGTGAATGGAAATGTGAATGCGATTGCAAACGCAAACGGGAATGTGAATGGTGTAGTTAAGGATAAGGAAGATGTAAAAAAACCAATTGAGAAAAAGAATTTGGTAGTGAAACTTGTGAGACAAGAAAAAGGAAAGGAAAAAGAAGTCACTAGGACAGTGAAATTGATCTTTGGAGATGATATAAGGTGGGCACAGTTGCCTGTGAATTGTAGTATGAGGTTGGTAAGGGATATAATAAGGGATAAGTTTCCTAGATTGAAGGGTGTTCTTGTCAAGTATAGGGATAGAGAAGGTGATTTGGTTACAATTACTACTACAACTGAACTAAGGTCAGCTGAAACTTTAGGTCATGTGCTCGGGTCGATTCGGCTATATCTTACTGAAGTAAGTCCAGATCAGGAACCGTCTTATGATGAAACAACAACAAAGGAGAGCGAGGTTCGAAAAGATGATAGAAGAGATGTAGTAAGAAAAACGACGATCACGGTTGAGGACTGGCTTGTACAATTTGCAAGGCTGTTCAAAAACCATGTTGGGTTTGATTCTGATGCATATCTAGATATTCATGAGGTTGGAATGAAGATATATTCGGCGGCGATGGAGGATACAGTGACAAGTGATGATGCTCAAGAGCTTTTTGAAATGGCAGAAGATAAATTTCAAGAGATGGCAGCTTTGGCCTTATTTAATTGGGGGAGTGTTCACATGTGCAGGGCGAGGAAGTGCGTATCGTTTCCCGAAGATGGACCAAGAGAATCTTCTATTGAACATGTTAAATCAACATATGAATGGGCTAAAGAGGAGTACATCAATGCAGAAAATAGATTTGAAGAAGCCTTAAAAATCAAACCCAACTTTTATGAAGGATTTCTTGTTCTCGGGTATCAGCAATTCGAGCAAGCAAAGCTCTGCTGGTGTTATTTGATCCTGAACAAGAATTTAGAAGTCGGTCCTTCCGAAGATGTTCTACAGCTCTATAACAAGGCAGAGGACAACATTGAGAAAGGGATGCTGATGTGGGAGGAGATCGAGGAGCAGCATCTGAGCGGACTATCTAAATCGGATAAACATAAAGAACAGTTAAAGAAATTGGGTTTGCATAATCTTTTCAATGATGTTTCGCCCGACGAAGCCGAAGAGCAAGTTGCGAAGATGAGGTTACAAATATATCTTCTATGGGGCACCATTTTGTATGAGCGTTCCGTTGTCGAATATAAGTTAGGACTACCAAGTTGGGAAGAATGTTTAGAAATCGCAGTCGAAAAGTTTGAACTAGCTGGAGCTTCCTCAAATGATATTGGTGTTATGATAAAGAATCATTGTTCTAATAAAACAGCAATGGAAGGATTCAAAATTGATGAGATAGTTCAAGCTTGGAATGAGATGTATAATGGTTGGCAGTTTAATGTTCCATCTTTTCGACTCGAACCATTGTTTCGTCGGCGTGTTCCAAAACTTCATTACATCTTGGAGCAATTTTGA 2151 0.4054 MGKPNGKKKDTESPKAINKESPKAIGKVGNNKVSSKLALDDDTAMFINMSHELREEGHRLFHKKDLEGAMSKYVKALKLLPKSHIDVAQLRTDMAGCYMQLGLGEYPKAINECNLALEVSPRYSKALLKRAKCYESLNRLDLAMRDVRIVLNTEPNNVAALEVLDSLRNTMDEKGIVIDETEIALATMQEAPCARLRKVVREKLKKKGHKSEVVEDNVNSNAKVNGNVNAIANANGNVNGVVKDKEDVKKPIEKKNLVVKLVRQEKGKEKEVTRTVKLIFGDDIRWAQLPVNCSMRLVRDIIRDKFPRLKGVLVKYRDREGDLVTITTTTELRSAETLGHVLGSIRLYLTEVSPDQEPSYDETTTKESEVRKDDRRDVVRKTTITVEDWLVQFARLFKNHVGFDSDAYLDIHEVGMKIYSAAMEDTVTSDDAQELFEMAEDKFQEMAALALFNWGSVHMCRARKCVSFPEDGPRESSIEHVKSTYEWAKEEYINAENRFEEALKIKPNFYEGFLVLGYQQFEQAKLCWCYLILNKNLEVGPSEDVLQLYNKAEDNIEKGMLMWEEIEEQHLSGLSKSDKHKEQLKKLGLHNLFNDVSPDEAEEQVAKMRLQIYLLWGTILYERSVVEYKLGLPSWEECLEIAVEKFELAGASSNDIGVMIKNHCSNKTAMEGFKIDEIVQAWNEMYNGWQFNVPSFRLEPLFRRRVPKLHYILEQF* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1781 716 MobiDBLite consensus disorder prediction 1 25 - -
Lan6g1781 716 CDD PB1 275 349 - -
Lan6g1781 716 SUPERFAMILY TPR-like 48 166 IPR011990 GO:0005515
Lan6g1781 716 ProSiteProfiles PB1 domain profile. 273 352 IPR000270 GO:0005515
Lan6g1781 716 SMART PB1_new 273 352 IPR000270 GO:0005515
Lan6g1781 716 SUPERFAMILY TPR-like 473 564 IPR011990 GO:0005515
Lan6g1781 716 Gene3D Tetratricopeptide repeat domain 44 176 IPR011990 GO:0005515
Lan6g1781 716 Gene3D - 270 344 - -
Lan6g1781 716 Coils Coil 478 498 - -
Lan6g1781 716 SUPERFAMILY CAD & PB1 domains 273 363 - -
Lan6g1781 716 SMART tpr_5 124 157 IPR019734 GO:0005515
Lan6g1781 716 SMART tpr_5 88 123 IPR019734 GO:0005515
Lan6g1781 716 SMART tpr_5 50 83 IPR019734 GO:0005515
Lan6g1781 716 SMART tpr_5 476 509 IPR019734 GO:0005515
Lan6g1781 716 PANTHER PROTEIN PHOX4 1 715 - -
Lan6g1781 716 MobiDBLite consensus disorder prediction 1 17 - -
Lan6g1781 716 Pfam PB1 domain 273 349 IPR000270 GO:0005515
Lan6g1781 716 PANTHER PROTEIN CLMP1 1 715 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1781 Lan-Chr6 29114035 29116812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1781 40 157 Calmodulin-binding Proteins AT3G25230 29.134 9.99e-07 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1781 6 29114035 29116812 Lan15g1045 15 19485161 19490410 PCT
Lan6g1781 6 29114035 29116812 Lan14g0817 14 14982595 14986546 PCT
Lan15g1045 15 19485161 19490410 Lan6g1781 6 29114035 29116812 PCT
Lan14g0817 14 14982595 14986546 Lan6g1781 6 29114035 29116812 PCT