Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1762 ATGGCGCGGCTGGGAGTTGGGAGCTTGAATGGCATTCAACATGTTATTGAAATAGCTGGGAGTACCGGCGCCTCTACTACTGCCTCGCATGACAGACATATTAATGGCATTGATATATCACGGCAAGAAGACATACATAGTGGTGCAAGGTTAACTGTTTCTCAGCCGTCAGTTTTAACGTCGAGTGCATCTAATGGGTCAAATACTAGGAATTCTTTGTCTGTAAGACGAGGGGAAACCCGCAGGCATAGGAGTCCAGTGCATTCTGCTTTATGGATATCTGTTGAGTTAGTCCTCTTAGTAAGCCAGATTATTGCATCTATCGTTGTTTTGTCTTTATCAAGGCATGAGCATCCACGTACCCCATTGTTTCAATGGATCTTCGGTTATGCAATTGGGTGTGGTGCTACTCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATTCGGGAGCAAGATTCTGCTCAACCACGTCAAACATCTCCTCAGATTAGTGATCCTTCAGGGACACTTCTTTCTAGTTCCAGAACTAATGGAGGAGAAGATGTTCAGGCTGTTGTTTCATCCAGAAGCAACCATGCTTCAGTGTTGGCGAATAGAAGAATGAAGACACTAATGGAATACTTTAAAATATCCCTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCTGATGATGCTCCTAACCTGTACAGCTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTGTGTTCAACAATCTGCTGTTTTCTCCCTTGTATAATTTCCATCCTCGGGGTTAGAGAAGATCTGGCACAAAACAGAGGAGCAACTTCTGAATCCATTAATGCTCTGCCAACGTTCAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGTGAAAGCAACTCAGCTGCTGCTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAGCGTGTGATCACTGGAGAAGACGCCGTTTGCTGCATTTGCCTGGCGAAGTATGAAAATAATGATGAGTTAAGAGAATTGCCTTGTTCCCATCTTTTCCACAAAGAGTGCATAGACAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTTGTTGAGAATGTAAGAAGATCCATCTCCAGGGAAGGTGCTAGCCAACAACAGCATGAGATCAGGGTTGAGAATGGTGTTGCCAGCACTGCAGTTTAA 1254 0.433 MARLGVGSLNGIQHVIEIAGSTGASTTASHDRHINGIDISRQEDIHSGARLTVSQPSVLTSSASNGSNTRNSLSVRRGETRRHRSPVHSALWISVELVLLVSQIIASIVVLSLSRHEHPRTPLFQWIFGYAIGCGATLPLLYWRYYHHNHIREQDSAQPRQTSPQISDPSGTLLSSSRTNGGEDVQAVVSSRSNHASVLANRRMKTLMEYFKISLDCFFAVWFVVGNVWIFGGHSSADDAPNLYSLCIVFLAFSCIGYAMPFILCSTICCFLPCIISILGVREDLAQNRGATSESINALPTFKFKMKKNKRSGESNSAAAEGGIVAAGTEKERVITGEDAVCCICLAKYENNDELRELPCSHLFHKECIDKWLKINALCPLCKSEVVENVRRSISREGASQQQHEIRVENGVASTAV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1762 417 SUPERFAMILY RING/U-box 333 389 - -
Lan6g1762 417 SMART ring_2 342 382 IPR001841 -
Lan6g1762 417 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 407 - -
Lan6g1762 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 388 IPR013083 -
Lan6g1762 417 MobiDBLite consensus disorder prediction 58 81 - -
Lan6g1762 417 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Lan6g1762 417 MobiDBLite consensus disorder prediction 156 180 - -
Lan6g1762 417 MobiDBLite consensus disorder prediction 398 417 - -
Lan6g1762 417 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 6 407 - -
Lan6g1762 417 MobiDBLite consensus disorder prediction 58 74 - -
Lan6g1762 417 CDD RING-H2_RNF111_like 341 383 - -
Lan6g1762 417 Pfam Ring finger domain 342 383 IPR001841 -
Lan6g1762 417 MobiDBLite consensus disorder prediction 154 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1762 Lan-Chr6 28851737 28862352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1762 74 389 C3H Transcription Factor Family AT1G80400 55.901 9.02e-131 380
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0977 10 14809612 14813972 Lan6g1762 6 28851737 28862352 LSH