Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1689 ATGTCCATCTTGCCCTCACAAACCCAAACAGCACCTTCATCTTCTTCTTCTTCTTCACCTTCTTCAAACCCTAATTCCCAACATGGATTTTCAATTCCTTCTTCTTCTTCTTCCATCGTGGACCTTCCTCTCGGATCCCTCCAGATCCATGATTCCCATATGGCAGGTCCATCAATTCCTGCTGCAGAAGATTCTAGTGGAACTTCCGAAAAGGTGACAGAATATGGGTCTCCAAATGATTTGGAGGCTTCATCTCAGCAAAACTCTAGAACACGTTCTAGGAGTCACTCAGGAAGACGAATGTCTAGATCATCTCAATCCGTGGGGAAGACAACAGGAACAACTTCTTCTCAAAGAAGTCAACAGACTCATGGGTCTGTAAATTCTCATGGAAACTCACCTTTGGCAGGAAGGAAGTCTCAGATGGTGAATGGTAATTACTTGCTGAATTTTCAGTACGATCCAATATCTCGTTCTCAGCCAAGGGGTCCTCCTCCTCCTCCACCCAGAAGGCAGCGGAAGAGAAAACCGTACAACAAAGATTTGTTTTTGCAGGCAAATTACAAATTCATGGTGCTAGATTCGGGAAATTATTCAGCTGAGTCTATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACTTATTCGACCCCCCTTCCAATTCAGTGTCCAATTTGTTTGGAGTATCCCCTCTGTCCACAAATAACCTCCTGTGGACATATTTTCTGTTTCCCATGTATTCTACAATACCTATTATTGGGTGAAGAGGATAACAAAGGTGAATGCTGGAAAAGGTGTCCTTTATGTTTCGTGATGGTATCTGTCAAAGATTTATATACCGTACACATAACAAATGTCAAACAGTATCAAGTAGGAGATAATATTGAGTTCACATTTTTAACTCGAAAAAAGGATTCATTTACTCTGTCCCATAAAAATAAACAAGAGACAGATATGACATCATGTGGCAATGAAGATTTATGTGATCCCTTTTCTAAGTTTACACTCACATCAGATGTAGACCTTTCAGTGAGACATGCAATCTCAGATCTTGATGGTTGGCTGGCCAGGGCTGATTCAGGTCTTGTTGATGACCTAGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAATTAAAGCAGAGAAAAAAGTATTGGAACGAGCACAGGGCTTGTGACAATGAAAAATCTTCTAGGCTTATTGATTATGGACATCAGATACCATCAGCAGCTGTAAGTTTTATGGACACTGATGATGAAACCCGTTCTAATGGATCAAGAACTTCCTCTACAGATTTCCATGACCGAAGTAAGGGCATAATATTGGATAAAGCAATTGCTGGGACCTCTCTGGATCAAACTTCGGATGTGGAGAAAGTTTTAGCAGATCAGGAAATGAATTTATCTTCATATGAGGAGAAAAATAGTATCCGAAGGCATTCGTATGGCAGTGGAGATGTTAAGGAAGGTGACTCGTACAATTTCTATCAGGCTTGTGATGGTCAGCATGTAATTCTCCATACACTGAACATGAAGGCTTTACTTCACCATTATGGGAGCTATGATAAGCTTCCACACAGAATAAGTGGAAGGATTCTGCAATTGGAGGCAGTTACTCAGTCCGAGGCCATGAGGAGGCGGTATCGATTCATAAGCCATTTTCCATTAACAACAACATTTCAGCTTTGTGAAATTGATTTGAGTGATATATTGCCTCCTGAAGCACTGGCCCCATTTATGGATGAAATAAAGAAGCGTTTAAATCAGAGGAAGCAGCTTGCAAAGAAGGAACTAAAGGAAAAAATCAAGGCTGAAGCTGCTTCTACTTATTCTGTTACCATACCAACAAGTTATCAGCTTGCTTCTCGTGATAATCCTCCTGTGTTCTCCATGGATGACTTTGGAGCTTTGGGAAATTCTGCTATGTCATCAAGTCCTCCAGTTGTTGGGGAAAGAAAATTGTTCTCAAATGTTACAAGGCTTGGTTTTGCTGCTGCTCATGATTCTCCATCCCTTCAAATTCAAGAGACGGGAGGATCACATGATAACAATACGACCATCGCGTCTTCTAGTGCAACAGGTTTGAGAAATGCGGAGGCACCATCATATTCCAATGTTATATCCAGACCAGACTCTAATATAAGCTTGAATGCACCGAAGACAAACGACGCAGGGAAGAGGGGAAAGAAACCTAATCGAGTTCTTCTCTCAACATCTGGTGGCAGGCGCTATTGA 2247 0.4143 MSILPSQTQTAPSSSSSSSPSSNPNSQHGFSIPSSSSSIVDLPLGSLQIHDSHMAGPSIPAAEDSSGTSEKVTEYGSPNDLEASSQQNSRTRSRSHSGRRMSRSSQSVGKTTGTTSSQRSQQTHGSVNSHGNSPLAGRKSQMVNGNYLLNFQYDPISRSQPRGPPPPPPRRQRKRKPYNKDLFLQANYKFMVLDSGNYSAESMDPDKMLQWEDIICVTYSTPLPIQCPICLEYPLCPQITSCGHIFCFPCILQYLLLGEEDNKGECWKRCPLCFVMVSVKDLYTVHITNVKQYQVGDNIEFTFLTRKKDSFTLSHKNKQETDMTSCGNEDLCDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLKQRKKYWNEHRACDNEKSSRLIDYGHQIPSAAVSFMDTDDETRSNGSRTSSTDFHDRSKGIILDKAIAGTSLDQTSDVEKVLADQEMNLSSYEEKNSIRRHSYGSGDVKEGDSYNFYQACDGQHVILHTLNMKALLHHYGSYDKLPHRISGRILQLEAVTQSEAMRRRYRFISHFPLTTTFQLCEIDLSDILPPEALAPFMDEIKKRLNQRKQLAKKELKEKIKAEAASTYSVTIPTSYQLASRDNPPVFSMDDFGALGNSAMSSSPPVVGERKLFSNVTRLGFAAAHDSPSLQIQETGGSHDNNTTIASSSATGLRNAEAPSYSNVISRPDSNISLNAPKTNDAGKRGKKPNRVLLSTSGGRRY* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1689 748 CDD RING-HC_RNF10 227 274 - -
Lan6g1689 748 ProSitePatterns Zinc finger RING-type signature. 242 251 IPR017907 -
Lan6g1689 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 307 IPR013083 -
Lan6g1689 748 Pfam Zinc finger, C3HC4 type (RING finger) 227 273 IPR018957 GO:0046872
Lan6g1689 748 MobiDBLite consensus disorder prediction 677 724 - -
Lan6g1689 748 SMART ring_2 227 273 IPR001841 -
Lan6g1689 748 MobiDBLite consensus disorder prediction 1 43 - -
Lan6g1689 748 MobiDBLite consensus disorder prediction 1 139 - -
Lan6g1689 748 SUPERFAMILY RING/U-box 226 280 - -
Lan6g1689 748 ProSiteProfiles Zinc finger RING-type profile. 227 273 IPR001841 -
Lan6g1689 748 MobiDBLite consensus disorder prediction 100 139 - -
Lan6g1689 748 MobiDBLite consensus disorder prediction 677 748 - -
Lan6g1689 748 MobiDBLite consensus disorder prediction 62 92 - -
Lan6g1689 748 Coils Coil 584 608 - -
Lan6g1689 748 MobiDBLite consensus disorder prediction 154 178 - -
Lan6g1689 748 PANTHER RING FINGER 10 FAMILY MEMBER 85 745 IPR039739 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1689 57 698 C3H Transcription Factor Family AT3G26730 51.652 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1689 - - gmx:100798764 1046.19