Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1681 ATGCCTTACCTTGTCCGAGAGAATCTCTTCATCGGCAACATCAGCGACGCAGCGGAGATTCTCCAAAACGGCACCGTTTCCATCACTCACATCCTCTCCGTTCTCAGCTCCGCCTCCATCTCTTTCTTCTCCGACTGGCGTAACGGCCTCACCATCCCTACCAAGGAGATAAAAAAACTCTATGCCGGCGCCGCCGCTGATGGTGGCGCCAAAACCGCTTTGTCGCCGGAGAAGCTTCTGTACTCGTTGGAGTACGCCGGTAACGATTTGAAGCTCGTAAGGATGGCGGTTCCGATTAGGGATACGGAGAATGAGGATTTGTTGGATTACTTGGAGGTTTGCATAGATTTCATTGATCGGAGTAGGAAGGAAAGTTCTGTTTTCGTTCACTGTTTTGCCGGAGTTTCTAGAAGCGCGGCAGTTATTACAGCATATTTGATGAGAACTGAACATCTATCTCTAGAAGATGCCCTTGAATCATTAAGGCAAAGCTGCGAATTTGTTTGCCCTAATGATGGTTTTTTAGAGCAGTTAAAACTGTTTGAGAAGATGGGCTTCAAGGTCGATTATTCTACCCCAATATACAGGCGCTTTCGTCTTAAAATACTAGGAGATCATTTCTCTGTGTCTGGAATAGACAGTTCTAAACTTGGTGCAGACCCTGGCATGCCTGTCCAAATTTCTTCAGATGTCGAAGAAACTACTAAAGTAGAAAATAAGCGTAGACTTACATATCGCTGTAAGAAGTGCCGACGTGTTGTTGCATTGGAAGAAAATGCGATAGATCATACTCCAGGAGAGGGTGAGACATCCTTTGAGTACAAGCGGAGAAGTGGCAACCCTTTTGATAACTCTAATGAGTCTGAGTGTTCATCCATATTTATTGAACCTCTACGATGGATGAAAGCTGTTGAGGAAGGCACATTGGAGGGAAAGCTGTCATGTGCGCAATGTGATGCTCGTTTGGGATACTTCAATTGGACAGGCATACAATGCAGCTGCGGAAGCTGGATAACCCCCGCTTTTCAACTCCACAAAGGCCGTGTAGATATAAGCCGTGTGTAA 1065 0.4592 MPYLVRENLFIGNISDAAEILQNGTVSITHILSVLSSASISFFSDWRNGLTIPTKEIKKLYAGAAADGGAKTALSPEKLLYSLEYAGNDLKLVRMAVPIRDTENEDLLDYLEVCIDFIDRSRKESSVFVHCFAGVSRSAAVITAYLMRTEHLSLEDALESLRQSCEFVCPNDGFLEQLKLFEKMGFKVDYSTPIYRRFRLKILGDHFSVSGIDSSKLGADPGMPVQISSDVEETTKVENKRRLTYRCKKCRRVVALEENAIDHTPGEGETSFEYKRRSGNPFDNSNESECSSIFIEPLRWMKAVEEGTLEGKLSCAQCDARLGYFNWTGIQCSCGSWITPAFQLHKGRVDISRV* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1681 354 PIRSF DUSP12 82 354 IPR016278 GO:0006470|GO:0008138
Lan6g1681 354 PIRSF DUSP12 3 46 IPR016278 GO:0006470|GO:0008138
Lan6g1681 354 Gene3D Protein tyrosine phosphatase superfamily 4 204 IPR029021 -
Lan6g1681 354 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 187 IPR020422 GO:0006470|GO:0008138
Lan6g1681 354 CDD DSP_DUSP12 4 189 - -
Lan6g1681 354 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311|GO:0016791
Lan6g1681 354 SMART dsp_5 1 184 IPR020422 GO:0006470|GO:0008138
Lan6g1681 354 MobiDBLite consensus disorder prediction 265 282 - -
Lan6g1681 354 MobiDBLite consensus disorder prediction 265 287 - -
Lan6g1681 354 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 350 - -
Lan6g1681 354 Pfam Dual specificity phosphatase, catalytic domain 92 183 IPR000340 GO:0008138|GO:0016311
Lan6g1681 354 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 187 IPR029021 -
Lan6g1681 354 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 108 163 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1681 Lan-Chr6 27301899 27309449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1681 56 183 Protein tyrosine phosphatase (PTP) family AT3G06110 32.117 3.65e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1681 K14819 - gmx:100804683 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1681 6 27301899 27309449 Lan3g0601 3 7056415 7063553 LSH