Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1636 ATGGGTATCTCTCGTGATTCCATGCATAAGAGGCGCGCAACTGGAGGCAAGAAAAAAGCTTGGAGGAAGAAAAGAAAGTACGAGCTTGGGAGACAACCAGCAAACACAAAACTTTCAAGCAATAAAACAGTTAGGAGGATTAGGGTCCGAGGTGGGAATGTCAAATGGCGTGCTTTGAGGCTTGATACTGGTAATTTCTCTTGGGGGAGTGAAGCTGTGACTCGCAAAACAAGACTTCTTGATGTGGTGTATAATGCATCCAACAATGAGTTGGTTCGTACTCAAACATTGGTCAAGGGGGCTATTGTTCAAGTTGATGCAGCACCTTTCAAGCAGTGGTATCTCCAACATTATGGTATTGAAATTGGTCGCAAGAAGAAGAGTACAACTTCGGCCAAGAAGGAAGGCGAGGTTGCTGAAACCACAACTGAGGAGGCGAAGAAGAGTAACCATGTCTTGAGAAAGTTGGAAAAGCGTACACAGAACCGGGTTCTCGATCCTCATATTGAAGAACAATTCGGAGGTGGTCGCCTTTTAGCTTCTATCTCATCTCGACCTGGCCAATGTGGTCGTGCTGATGGATATATATTAGAGGGAAAAGAGCTGGAGTTCTACATTAAGAAGCTTCAGAGAAAGAAGGGCAAGGGAGCTGCTGCTTAA 660 0.4515 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGIEIGRKKKSTTSAKKEGEVAETTTEEAKKSNHVLRKLEKRTQNRVLDPHIEEQFGGGRLLASISSRPGQCGRADGYILEGKELEFYIKKLQRKKGKGAAA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1636 219 MobiDBLite consensus disorder prediction 1 40 - -
Lan6g1636 219 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Lan6g1636 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Lan6g1636 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lan6g1636 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 219 - -
Lan6g1636 219 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lan6g1636 219 MobiDBLite consensus disorder prediction 11 26 - -
Lan6g1636 219 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Lan6g1636 219 MobiDBLite consensus disorder prediction 125 151 - -
Lan6g1636 219 CDD Ribosomal_S8e_like 5 197 - -
Lan6g1636 219 Gene3D - 28 213 - -
Lan6g1636 219 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1636 Lan-Chr6 25425275 25428749 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1636 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 83.010 2.68e-123 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1636 K02995 - nnu:104594192 383.645