Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1623 ATGGATGAAGGTGAGAGCGGTAATCCCATGTTTCAGTTCCACCGTAACGAAGCTATATCCGCCGTTGCCGACGACGGTTTTTTGGCTGAAGAAGATGACGATTACGATGACCTTTACAACGATGTTAATGTCGGTGAAGGGTTCCTTCAATCCTTGAGCAAGAGCAACAATAACAACGATGATTTAGGGTTTAGAAACGATGATGTTAAGTCACAGTCAGCACCGGTGAATCATGATGCGATTGGGGTTTCTGTACCTGGTGTGAAGGGTGAGAGTACCGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGTTTCTGATAGAGGTGATGGGTTACAGAATCAAGGGTTCAGAGGGGTTGAGGTTGGTGTGAAAGGAGGAGGTGGTGGATCGGGCGGTGGATCGGGTGGTGGAGGTGGAATTAGGGTTGAATTAGGGAAGCCATCTGTGAAATTGAGCGAGATCGAGGATCAGATTGGTAATGATAATAGTGTTGGAGTGCAGCAAGCAATTGGTGGAGTTGTTGGAAGTGTGGGAAATGAGGGTTTGGTTAGGCAAAGTGGTGTTGTTGGTGTAAATCTTAATAGGGTTGGTGGGAATGGTGTTGGAAATAGTGTCAGTGCTGTTACTGGTGTTAACACTGCTGGTGGTGGTGCAGCTGCTGTGGCTGCTGCTGGTGGTGCAGCTGCTGCTGGGGGTACTGTATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAGGCTGTGCTTTGTAATTATGGGCCTGTCAAGGAGGTCAAGTTTTTCGACGAGAAAGCCAGTGGGAAATCCAAAGGGTACTGCCAAGTTGAGTTTTTTGATCCTTATGCTGCAACTGCTTGTAAGGAAGGGATGAATGGGCATGTGTTTAATGGGAGGCCATGTGTTGTTGCTTATGCGTCACCATTTACAGTTAAGAAAATGGGAGAGGCTCAAGTGAATAGGAATCAGCAGGTGACCCAATCTGCTCCTCCCCAGCAGGGAAGGAGGGGGCCTGCTTCGGACGTAGGGCCTAAGCCTGGTGGTAATAATATTGCAACAGGGGGGAATTTTCAAGGTGGAGATGGGAATAATAGAGGAGGTTATGGAAGAGGTAACTGGGGAAGGGGGAATAATCCCGGGATGGGGAATAGAGGGGCTGTTAATCCGATGAGGAATAGGGGTGGTGGGATGGGTGGTAGAGGTATGATGGGAAATGGTGGGAATGGCTTCGGACAGGGTATTGGTGGTACCCCGCCTATGATGCATCCCCAGTCGATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGTGGCTATGGAGGCTTTCCTGGTGGTCCCATGCCTCCATTCTCTGGGATGTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTACCGGGAGTAGCGCCTCATGTTAATCCAGCCTTTTTTGGAAGAGGAATGCCTATGAATGGTATGGGGATGATGCCCACACCTGGTATGGATGGTCCTAATATGGGAATGTGGTCGGATCCAAGTATGGGTGGATGGGGTGGTGAAGAGCATGGTGGTGGCAAGGCTGGTGAATCAAGTTATGGGGAGGAAGCTGCGTCTGACCATCAATACGGTGAGGCTAGTCATGATAGAAGTGGGTGGACTAATAATGCCAGGGAAAAAGATAGAGGGCCGGAAAGGGACTGGTCTGGTACTTCTGAGCGAAGGCATAGGGATGATAGAGATCAAGGATATGAGAGAGATGCTCCTAGAGAGAAAGATATGGGCCATGACCAGGAATGGTCAGAGAGAAGGCACCGTGATGATAGAGAAGTGAGCCGAGAACGAGATAGGGGTCGTGAACAATCTCGAGACCGTGGTCGTGAAAGGGATCGGGAACGAGAGCATGACAGGTACAAGGAAGATAGGGACAGATATGCAGATCATCAAAGGCAAAGAGACCGCGAAGCAGAGCATGAGGAGGAGTGGGAAAGGGGTCAGTCATCTAGGGCTCGCAGCAAATCACGATTTTTACAGGAGGAGGACCACCATTCTAGGTCAAGAGATGCTGATTATGGGAAGAGGAGGCGGCTCACCTCTGAGTGA 2106 0.5 MDEGESGNPMFQFHRNEAISAVADDGFLAEEDDDYDDLYNDVNVGEGFLQSLSKSNNNNDDLGFRNDDVKSQSAPVNHDAIGVSVPGVKGESTGGGGGGGGGGVSDRGDGLQNQGFRGVEVGVKGGGGGSGGGSGGGGGIRVELGKPSVKLSEIEDQIGNDNSVGVQQAIGGVVGSVGNEGLVRQSGVVGVNLNRVGGNGVGNSVSAVTGVNTAGGGAAAVAAAGGAAAAGGTVLFVGDLHWWTTDAELEAVLCNYGPVKEVKFFDEKASGKSKGYCQVEFFDPYAATACKEGMNGHVFNGRPCVVAYASPFTVKKMGEAQVNRNQQVTQSAPPQQGRRGPASDVGPKPGGNNIATGGNFQGGDGNNRGGYGRGNWGRGNNPGMGNRGAVNPMRNRGGGMGGRGMMGNGGNGFGQGIGGTPPMMHPQSMMNQGFDPAFGGPMGRMGGYGGFPGGPMPPFSGMLPSFPGVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTPGMDGPNMGMWSDPSMGGWGGEEHGGGKAGESSYGEEAASDHQYGEASHDRSGWTNNAREKDRGPERDWSGTSERRHRDDRDQGYERDAPREKDMGHDQEWSERRHRDDREVSRERDRGREQSRDRGRERDREREHDRYKEDRDRYADHQRQRDREAEHEEEWERGQSSRARSKSRFLQEEDHHSRSRDADYGKRRRLTSE* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1623 701 Gene3D - 217 319 IPR012677 -
Lan6g1623 701 MobiDBLite consensus disorder prediction 504 701 - -
Lan6g1623 701 SUPERFAMILY RNA-binding domain, RBD 231 321 IPR035979 GO:0003676
Lan6g1623 701 SMART rrm1_1 234 307 IPR000504 GO:0003723
Lan6g1623 701 MobiDBLite consensus disorder prediction 542 701 - -
Lan6g1623 701 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Lan6g1623 701 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 700 - -
Lan6g1623 701 MobiDBLite consensus disorder prediction 323 337 - -
Lan6g1623 701 CDD RRM_CFIm68_CFIm59 235 308 - -
Lan6g1623 701 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Lan6g1623 701 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 700 IPR034772 -
Lan6g1623 701 MobiDBLite consensus disorder prediction 323 422 - -
Lan6g1623 701 MobiDBLite consensus disorder prediction 80 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1623 Lan-Chr6 24494228 24498112 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1623 213 309 Eukaryotic Initiation Factors Gene Family AT4G34110 33.981 2.72e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1623 K14398 - gmx:100782869 717.613