Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1605 ATGAGTACTCTAGGTCCAACACAGTTATTGTATAATTCAAGAAGCATGGTTTCAAGTTCTTCACCAGAAGATAGAATGGGTAGTGCACAAAACATGCCTTCTTTTTTGACTAGAATGGCCATGAGAATATCTAGAGCAAGATGGTTTAGTTTCTTGAGAAGAGTATTCCACTACCAAAATGGTTCATCATCAGGATCTGATCTTGGCTCTAATCCTTTCAATTCTAGAAAATGGATGATGTTGGAGTTTGTTGCTTTGATAGTCCAAGTAACTAGTACAACAATCACTTTGGCCTTTTCAGAAAGTGAGAGACCTATTTGGCCTATGAGAATATGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTGCTTGTACTTTATGGCCGCTACCATCAACTGTATGTGACACATGGTAATGCTATTGGACTTTCTAATATGGAGCAGCAGGGAAATAATGAAGAAACCAGTTCACACAGGAGCTCACATTTGATGGACAAATGTAGGAGTTCACTAGAGCTATTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGCTTTTGATTCTCATTTTGGGTCTTTCCAACGAGCACCAAAACTCAATATGCTATGTATCATCCTACTTTCTTGGAATGCATTATGCTACTCTTTCCCCTTTATACTATTTTTGCTTCTATGCTGTTGTGTTCCAATGATTAGCACCTTCCTTGGATATAACATGAACATGGGTTCCTCTTCTAGAGGAGCATCTTATGATCAAATCTCACATCTTTCTAGTTGGAGATATAAAAAAGTTCATACCAAATTAGAGCATGGCAATGACTCTGAAAGTAGTGAAAGATTCACCAATGATGATCCAGAATGTTGCATTTGCCTAGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCCTGTTCCCATTTGTTTCACCAAAAATGTGTGGATCAATGGCTCAGAATTATATCTTGTTGCCCTCTTTGTAAACAAGAATTACAGAGGTAA 1008 0.377 MSTLGPTQLLYNSRSMVSSSSPEDRMGSAQNMPSFLTRMAMRISRARWFSFLRRVFHYQNGSSSGSDLGSNPFNSRKWMMLEFVALIVQVTSTTITLAFSESERPIWPMRIWIAGYDIGCVLNLLVLYGRYHQLYVTHGNAIGLSNMEQQGNNEETSSHRSSHLMDKCRSSLELFFAIWFVMGNVWAFDSHFGSFQRAPKLNMLCIILLSWNALCYSFPFILFLLLCCCVPMISTFLGYNMNMGSSSRGASYDQISHLSSWRYKKVHTKLEHGNDSESSERFTNDDPECCICLAKYKDKEEVRQLPCSHLFHQKCVDQWLRIISCCPLCKQELQR* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1605 335 CDD RING-H2_RNF111_like 287 330 - -
Lan6g1605 335 ProSiteProfiles Zinc finger RING-type profile. 289 330 IPR001841 -
Lan6g1605 335 SUPERFAMILY RING/U-box 280 333 - -
Lan6g1605 335 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 334 - -
Lan6g1605 335 Pfam Ring finger domain 288 330 IPR001841 -
Lan6g1605 335 SMART ring_2 289 329 IPR001841 -
Lan6g1605 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 334 IPR013083 -
Lan6g1605 335 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 23 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1605 Lan-Chr6 23923546 23926522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1605 35 333 C3H Transcription Factor Family AT4G26580 66.221 4.02e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1605 - - gmx:100818715 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0814 10 11492049 11495560 Lan6g1605 6 23923546 23926522 LSH