Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1598 ATGTATGGTATGAAAGTTACCAGACCCAGAATTTGTGTTACCTCCAGAAGGTCTTTACCTATGGATACTAAATCAGCTGTAGATTTAATGGAGTCTTCCTCCGAGGTTCATTTTTCTGGATTTCACATGGATAGTTTTGAGCAAAGAAAGGATGACATAGAACAACCAACAACATCAGCAACTAACATGTACAGACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCGGGCAAGACAACAGTCTGTGATATGATTATTCAGCAACTTCATGACCAACGAGTTGTACTGGTTAACCAGGATTCTTTTTACCATAACTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCCGATGCTTTTGATACTGAGCAATTGCTACGTGTTATGGACAAGTTGAAGTGTGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATCTGCATCCATCAAGAAGGGTAAACCCTTCAGATGTTATAATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCGGATGTTCGTTTAGCTAGAAGGATTAGGCGCGATACTGCTGAGAAGGGTCGAGATATTGGAACAGTTCTTGATCAATATTCAAAATTCGTGAAGCCTGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCTCGTGGAGGAGATAATCACGTGGCCGTTGATCTGATAGTACAGCATATCCGCACAAAGCTTGGTCAACATGACCTATGTAAAATATATCCCAATTTATATGTGATTCATTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCCAGATAACAAAACATGATTTTGTATTTTATTCTGATCGTTTGATTCGTTTGGTTGTAGAACATGGCTTGGGGCATCTTCCATTTACAGAAAAGCAAGTAATCACTCCGACGGGTTCTGTATACACTGGTGTGGATTTTTGTAAGAGGTTATGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTCTTCGAGCGTGTTGCAAAGGTATCAAGATTGGGAAAATTCTAATTCATAGAGAAGGTGACAATGGTCAACAGCTAATATATGAGAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGATCCTATCCTTGGCACAGGTAACTCTGCTGTTCAAGCAATTTCTTTACTTTTAAGAAAGGGTGTACCAGAGTCCAACATCATATTTCTTAATCTCATATCTGCACCTCTAGGTGTGCATGTGGTCTGCAAAAGCTTCCCAAGAATAAAAATAGTGACATCCGAGATTGAGATTGGTTTGAACAAAGATTTCCGCGTCGTACCAGGCATGGGCGAGTTTGGAGATCGCTACTTCGGAACAGATGATGATGATGAGCAGGTGGTGGCTTCTTCAAAGTAG 1497 0.4035 MYGMKVTRPRICVTSRRSLPMDTKSAVDLMESSSEVHFSGFHMDSFEQRKDDIEQPTTSATNMYRQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPDAFDTEQLLRVMDKLKCGEAVDIPKYDFKSYKSDLHPSRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTAEKGRDIGTVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPESNIIFLNLISAPLGVHVVCKSFPRIKIVTSEIEIGLNKDFRVVPGMGEFGDRYFGTDDDDEQVVASSK* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1598 498 CDD PRTases_typeI 344 459 IPR000836 -
Lan6g1598 498 PANTHER URIDINE KINASE 35 489 - -
Lan6g1598 498 Pfam Uracil phosphoribosyltransferase 285 486 - -
Lan6g1598 498 CDD UMPK 69 267 IPR000764 -
Lan6g1598 498 SUPERFAMILY PRTase-like 270 487 IPR029057 -
Lan6g1598 498 TIGRFAM udk: uridine kinase 67 267 IPR000764 -
Lan6g1598 498 Pfam Phosphoribulokinase / Uridine kinase family 69 255 IPR006083 GO:0005524|GO:0016301
Lan6g1598 498 Gene3D - 271 486 IPR029057 -
Lan6g1598 498 PRINTS Uridine kinase signature 67 84 - -
Lan6g1598 498 PRINTS Uridine kinase signature 97 108 - -
Lan6g1598 498 PRINTS Uridine kinase signature 142 157 - -
Lan6g1598 498 PRINTS Uridine kinase signature 199 209 - -
Lan6g1598 498 PRINTS Uridine kinase signature 213 224 - -
Lan6g1598 498 PRINTS Uridine kinase signature 235 248 - -
Lan6g1598 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 260 IPR027417 -
Lan6g1598 498 Gene3D - 64 270 IPR027417 -
Lan6g1598 498 PANTHER URIDINE KINASE 35 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1598 Lan-Chr6 23714688 23722247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1598 21 489 PRT Gene Family AT4G26510 83.227 0.0 813
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1598 K00876 - gmx:100527893 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1598 6 23714688 23722247 Lan2g1374 2 24377692 24384867 LSH
Lan6g1598 6 23714688 23722247 Lan2g1374 2 24377692 24384867 PCT
Lan2g1374 2 24377692 24384867 Lan6g1598 6 23714688 23722247 PCT