Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1594 ATGAAGATCACTGTTATGACTGCTGATGAACAAATAATTACGTTGGATGTGGATTCCCACGAATCTGTGGAAAACGTTAAAGCATTGCTTGAAGTTGAGACAAGTGTGCCTCTTCAGCAACAGCAGCTTCTGTTTAATGGGAGTGAGGTGAGGAATTCTGACAAGTTAAGTGCAATTGGTGTTAAGGATGATGATTTGTTAATGATGGTCTCTGCTGCTGCTGCTTCTAGTGTATCTACCGATGATTTACGTGTAAATGCTGATGGATCTGCTGCAAACCCTGGTGCTTTCCAGCAGCGCATTAGACATGATTCTGATTTGATGGGCCGTCTCTATCAGAATGATCCGGAGTTGGCACAAGCTATTCTAGGGAACGATCTTAATAGATTGCAGGAAATTTTACGATTGCGTCATCGCCAAAGAGATCAATTTCAGCGTCAGAAAGAAGAAGAGCTTGCTCTTCTATATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGTCAGAAAGGAATTGATGAAAATTGGGAAGCTGCTTTAGAGCATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTCCCTCTGAAGGCTTTTGTAGATAGTGGAGCCCAGTCTACCATCATATCAAAAAGCTGTGCTGAGCGTTTGGGATTGTTGAGACTTTTAGATCAGCGTTACAAAGGAATAGCCCATGGAGTTGGCCAATCAGAAATATTGGGCCGAATACATGTAGCTCCAATCAAGATTGGAAATGTATTTTATCCGTGCTCATTCTTAGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGGCTGGATATGCTCCGAAAACACCAGTGTATAATTGATTTAAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCAGTGCCATTCTTGCAAGAGAAAGACATACCGTCTCGGTTTCTAGATGAGGAAAAGTATGCTAAGGAAGCTTCAAGCTCAGGTGGCCCGGTTACTTCTGGGACTGCCAATCCATCACAAGGTCAGGCTTCTGGAGGAGCTTCTGGTGACAGGTCTAAGGATGCTGGTTTCGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGGAAGAGATGCAGTTGTACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAAGCAGCTGGATTTCTCTTTGGGGGTTGA 1218 0.4294 MKITVMTADEQIITLDVDSHESVENVKALLEVETSVPLQQQQLLFNGSEVRNSDKLSAIGVKDDDLLMMVSAAAASSVSTDDLRVNADGSAANPGAFQQRIRHDSDLMGRLYQNDPELAQAILGNDLNRLQEILRLRHRQRDQFQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNVFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASSSGGPVTSGTANPSQGQASGGASGDRSKDAGFEAKVAKLVELGFGRDAVVQALQLFNGNEEQAAGFLFGG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1594 405 Pfam UBA/TS-N domain 368 401 IPR015940 -
Lan6g1594 405 CDD Ubl_Ddi1_like 1 69 IPR033882 -
Lan6g1594 405 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Lan6g1594 405 MobiDBLite consensus disorder prediction 334 362 - -
Lan6g1594 405 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Lan6g1594 405 SUPERFAMILY UBA-like 365 405 IPR009060 GO:0005515
Lan6g1594 405 Gene3D - 1 82 - -
Lan6g1594 405 SMART ubq_7 1 72 IPR000626 GO:0005515
Lan6g1594 405 Pfam Aspartyl protease 175 297 IPR019103 GO:0004190|GO:0006508
Lan6g1594 405 Gene3D Acid Proteases 176 322 IPR021109 -
Lan6g1594 405 Gene3D - 368 403 - -
Lan6g1594 405 CDD RP_DDI 182 305 IPR019103 GO:0004190|GO:0006508
Lan6g1594 405 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 403 - -
Lan6g1594 405 SUPERFAMILY Acid proteases 182 298 IPR021109 -
Lan6g1594 405 CDD UBA_scDdi1_like 368 403 - -
Lan6g1594 405 SUPERFAMILY Ubiquitin-like 1 75 IPR029071 -
Lan6g1594 405 SMART uba_6 367 404 IPR015940 -
Lan6g1594 405 MobiDBLite consensus disorder prediction 336 357 - -
Lan6g1594 405 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lan6g1594 405 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lan6g1594 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 405 IPR015940 -
Lan6g1594 405 PANTHER AT13091P 1 403 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1594 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 4.86e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1594 K11885 - gmx:100779464 673.7