Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1588 ATGGGAGGTAGAATAATAAGTAGTGGTGGATATGGTGCAATTCCAATTCATGGGAGTGAAAATATGAAGGCTATAAACCCTTCTATGTTTAGGTCAGGTTCTTCTTTGACAGCCATAGATAGGTTCTTATGGAGTCAACAAAGCCACTTTCCTCAGAAGCAACAACAACAGCCTCATATTAATGTTGCAAAGAACACTCATGCAAGTGTTTTTGATGATGAGTTCTATAGGTTTTCTTGTTCTGATGGTGGTTCAACCTATAGGTTTGTGTGGCCTAGTTACACTCAAGAAGGAAGCTTATATGATGAATTCATAGAAAATGAAGAAGCTTTGAATTGGGCACAGCAGTTTCCTACATTGTGTCAGAATGAAGATGTTCAAGGTTTAGGGAAGAATGTGAAAATGGTGGGAAGAAGGCCTAAGAAAGGGTCACCTGTGTCTTTGATCAAAGGACAGTGGTCTCAAGAAGAAGATAGGAAATTGTTGAAGTTGGTGAAGCAATATGGTGTGACAAAATGGTCTCAAATAGCTGAGAAGTTGGAGGGAAGGGCTGGTAAGCAATGTAGAGAAAGATGGAATAATCACCTAAGGCCAGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATCTTAGTAGAAACCCATTCAAAGATTGGAAATAGATGGGCAGAGATAGCAAAGTGCATTCCTGGAAGAACTGAAAATGCCATAAAGAATCATTGGAATGCCACTAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAGGCCAGCAACCTCAAATGGAAAGCCTCAACCAACAATTCTTCAAGACTATATCAAACACAAAACTCTTACCACATCAACAACTACCATTCCTTCTAGCTTTACCACAGAAATCTCACAGAACATTGCAGCTGAAGCGTCATCAAGCCAATTAAGTCTCTTGTTATCTCAACCTTCTGAATCTATTACCACTGAAAATGGCACCTCATCACCACTTATAGATGAGTTAAATGATTATGAGTTCCTCTTCATGCAAGAACTTTTCAAGGAGCATAATTTTCAGACCCTTAATGTTGCTGAAAGTGTTAACCACTCCAAGAGTGTGAGTTATAGCCAAACTAATAATGGTAATCAGCTTCTTACTGATGTGAATGAGTGTGGGTTTGTCTATTCCAATATAAAGCCAAACAACATGTTCTTTGATGAGAGTCTCATTTCTAAAAAGACTCCTACTCCTACCAATTACCTTGATCTCTATCTCTCACACTTGTTGAATGGAGCTGCAAGTTCTTCTTCATCACTTTGCTGTGATTATGGGAATCAGAATCTGAACACTGATTTGAAGTTGGGGGATGATCAAGATTGTTCAGAAGAAAATAAGAAAGAGATGGATTTGGTAGAGATGGTTTGCTCCACAAGTTTTCCTACTAGCAGCTTCTGA 1431 0.3857 MGGRIISSGGYGAIPIHGSENMKAINPSMFRSGSSLTAIDRFLWSQQSHFPQKQQQQPHINVAKNTHASVFDDEFYRFSCSDGGSTYRFVWPSYTQEGSLYDEFIENEEALNWAQQFPTLCQNEDVQGLGKNVKMVGRRPKKGSPVSLIKGQWSQEEDRKLLKLVKQYGVTKWSQIAEKLEGRAGKQCRERWNNHLRPDIKKDSWSEEEERILVETHSKIGNRWAEIAKCIPGRTENAIKNHWNATKRRQNSRRKNKRPATSNGKPQPTILQDYIKHKTLTTSTTTIPSSFTTEISQNIAAEASSSQLSLLLSQPSESITTENGTSSPLIDELNDYEFLFMQELFKEHNFQTLNVAESVNHSKSVSYSQTNNGNQLLTDVNECGFVYSNIKPNNMFFDESLISKKTPTPTNYLDLYLSHLLNGAASSSSSLCCDYGNQNLNTDLKLGDDQDCSEENKKEMDLVEMVCSTSFPTSSF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1588 476 Gene3D - 149 201 - -
Lan6g1588 476 SMART sant 201 249 IPR001005 -
Lan6g1588 476 SMART sant 149 198 IPR001005 -
Lan6g1588 476 MobiDBLite consensus disorder prediction 246 260 - -
Lan6g1588 476 MobiDBLite consensus disorder prediction 238 269 - -
Lan6g1588 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 251 IPR017930 -
Lan6g1588 476 Gene3D - 203 269 - -
Lan6g1588 476 Pfam Myb-like DNA-binding domain 153 210 - -
Lan6g1588 476 ProSiteProfiles Myb-like domain profile. 150 196 IPR001005 -
Lan6g1588 476 CDD SANT 204 247 IPR001005 -
Lan6g1588 476 PANTHER MYB TRANSCRIPTION FACTOR 53 440 - -
Lan6g1588 476 ProSiteProfiles Myb-like domain profile. 197 247 IPR001005 -
Lan6g1588 476 SUPERFAMILY Homeodomain-like 147 243 IPR009057 -
Lan6g1588 476 PANTHER MYB PROTEIN-RELATED 53 440 - -
Lan6g1588 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 200 IPR017930 -
Lan6g1588 476 CDD SANT 153 196 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1588 Lan-Chr6 23461995 23464347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1588 141 469 MYB Transcription Factor Family AT5G58850 40.960 1.97e-76 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g1588 Myb_DNA-bind_6 1.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1588 K09422 - gmx:100786295 419.083