Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1580 ATGGTAAAAACAACGCCGTTTCTTCTCTGTGCTATACTCCTCATAGGAACCCTAGCTCTCGTTCAGGCAAAGAAATCGAAGGAGGATTTGAAAGAAGTGACGAACAAGGTTTACTTTGATGTTGAGATTAATGGAAAGTCTGCAGGTCGTATTGTAATAGGACTTTATGGGAAGACAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTTTGCACAGGGGAAAAAGGGACTGGTAAAAGTGGAAAGCCTCTCCATTACAAAGGTAGCTCATTCCATAGGATTATACCTAGCTTTATGCTCCAAGGAGGTGACTTTACACATGGCAATGGAATGGGCGGCGAATCCATTTATGGCGAGAAGTTTCCTGATGAGAACTTCAAGCTAAAGCATACCGGACCAGGACTTCTATCAATGGCGAATGCTGGTTCTGATACCAATGGTTCACAATTCTTCATTACAACTGTGACAACTAGCTGGTTGGATGGAAGGCATGTTGTTTTTGGAAAGGTGCTTTCTGGAATGGATGTTGTTTACAAGATTGAAGCTGAAGGAAATCAAAGTGGTACTCCCAAGAGCAAGGTTGTAATTGTTGACAGTGGTGAACTACCTCTATAA 615 0.4211 MVKTTPFLLCAILLIGTLALVQAKKSKEDLKEVTNKVYFDVEINGKSAGRIVIGLYGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFPDENFKLKHTGPGLLSMANAGSDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGNQSGTPKSKVVIVDSGELPL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1580 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 12 204 - -
Lan6g1580 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Lan6g1580 204 Gene3D - 22 203 IPR029000 -
Lan6g1580 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 CDD cyclophilin_ABH_like 36 200 - -
Lan6g1580 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 199 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Lan6g1580 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 204 - -
Lan6g1580 204 PIRSF Peptidylpro_ismrse 20 203 IPR024936 GO:0003755
Lan6g1580 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1580 Lan-Chr6 23208726 23211374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1580 49 199 U-box Gene Family AT5G67530 41.830 2.94e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1580 K01802 - gmx:100305485 378.637