Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1578 ATGTGCACCGGTTCCAATGGTTTACACCACAGAATTTCTGCGTTGCTCGAGTTTTCGGCTGCAGATGATGTGAAGGGTTTCAAAGAAGCAGTTGAAGAAGAGGGTCATGATGTTAATGAGGTGGGTTTATGGTATGGAAGGAGGGTTGGTTCAAAAGAAGTTGGTTATGAAGAGAGGACCCCTCTAATGATTGCTGCTATGTTTGGAAGTAAAGGTGTGTTATCTTTTATTCTTGAATCGGGTGTTGTCGATGTTAACAAGGCTTGTGGTTCAGATAGGGCCACTGCCCTTCATTGTGCTGTTGTTGGGGGTTCTACTGCCTCCCCTGAGGTTATCAGGCTTTTGCTTCATGCATCGGCAGATGTTAGTGCTGTTGATGCTAACGGGAACCGGTGCTACGACTTGATCGGCATTGTGTCCAATAGTATCTTCAATTCAAGGAAGAGGATATTAGAAGCAGTGCTAGAAGGTAGAGAAGGTGTTGATGAGGCTGGCCTTACATTTGAGGAAGCAGATGGCCAAATGGTTAGACAGCAACAGCTATATATCGATTCACCTCGTGTTTCGAAGGACGGGACTGAAAAGAAAGATTATCATGTTGATCTTTCTCTTCCAGACATAAAGGACGGGATGTATAGCACAGATGAGTTTAGGATGTACACATTCAAAGTGAAGCCTTGTTCAAGGGCCTATTCTCATGATTGGACTGAATGCCCCTTTGTTCATCCGTGTGAAAATGCAAGGCGACGAGATCCTGTGAAATATCAATACAGCTGTGTCCCTTGCCCTGAGTTCCGGAAGGGATTGTGCAGCAAAGGGGATGCTTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCAGCGCAGTATCGAACACGACTTTGCAAGGATGAGAGTGGATGCATGAGAAGAGTATGCTTTTTTGCTCACAAGCTGGAAGAGCTTCGCCCCTTGTATGCTTCTACTGGTTCTGCATTGCCTTCTCCCCAATCATATCCAGCTAGTGCTTCGTCATTGGATATTGGTTTGGATAGCCGTTTATCACTAGGGTCTCCATCTGTCTTGACACCACCTGCCTCAGCACCACCTTTGATTCCATCTGGAGCATCTTCTACTGCTGGCGGAGCTATGTGGCAGTCCCCTACCCTTCAGCTTGCCAGAAGCAGGTTGAAAACTGCATTAAATGCTAGAGATTTTGATTTAGATATTGAATTGTTTGGACATGAAAATCGTCAGCAGATGCTATTGTTAGATGAGATGGCTGGTTTTTCACCCCCTTCGAAATGGAAAAGTACTATGGCGAAAAGTCCATCTTTCCCTGTTTCTTTGGGTGATGATGCTGGGGAGTTAAATAGGCTTGCAGGAGTGCATACTAACCTCGAAGACATTTTCGGGTCTCAGTTACAATCTCCAACTGGAATCCAAGCACATCAGAATGTGAACAAGCAATTGAGGGGCTATTCTTCAAGCCTCTCCCCTTCAAATGTGATTGGATCACCATCATTTATGGTTGATCTATCTGGCTCTGCTTCCACATTGTCTTTGAATTCAAGAAATGCTGCCCTTTCAAAGCAAAGCCAGAACTTTATTGAGCGTTGTGTCGTGAACCATAATTCCGAGCTTTCTTCGCCAGTGGAGCCTTCAATCTTCTCTGGATGGGGCTCCCCTGATGGCAAATTAGATTGGGGCATCCGCGGAGAAGAGCTGAATAAGATGCGAAAATCTGCTTCTTTCGGATTTCGAGCAACCAATAGTCCTTTAACACTGGCTGCAACCAAAGCGCCACCAAATGTTGATGAACCAGATGTATCTTGGGTTCATTCACTAGTGAAGGATGGTCCACCAATTGAATCTGGTCAGTATAGTGTTGAAGAGCAGCGACAGCAGCCGCAACGCTATCTTAACAATGGAACGGATGTGGTTCCGGCTTGGCTGGAACAACTGTACATGGAGCAGGAACAGGAGCAGATGGTAGCTTGA 1986 0.4567 MCTGSNGLHHRISALLEFSAADDVKGFKEAVEEEGHDVNEVGLWYGRRVGSKEVGYEERTPLMIAAMFGSKGVLSFILESGVVDVNKACGSDRATALHCAVVGGSTASPEVIRLLLHASADVSAVDANGNRCYDLIGIVSNSIFNSRKRILEAVLEGREGVDEAGLTFEEADGQMVRQQQLYIDSPRVSKDGTEKKDYHVDLSLPDIKDGMYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPCENARRRDPVKYQYSCVPCPEFRKGLCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCMRRVCFFAHKLEELRPLYASTGSALPSPQSYPASASSLDIGLDSRLSLGSPSVLTPPASAPPLIPSGASSTAGGAMWQSPTLQLARSRLKTALNARDFDLDIELFGHENRQQMLLLDEMAGFSPPSKWKSTMAKSPSFPVSLGDDAGELNRLAGVHTNLEDIFGSQLQSPTGIQAHQNVNKQLRGYSSSLSPSNVIGSPSFMVDLSGSASTLSLNSRNAALSKQSQNFIERCVVNHNSELSSPVEPSIFSGWGSPDGKLDWGIRGEELNKMRKSASFGFRATNSPLTLAATKAPPNVDEPDVSWVHSLVKDGPPIESGQYSVEEQRQQPQRYLNNGTDVVPAWLEQLYMEQEQEQMVA* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1578 661 SUPERFAMILY Ankyrin repeat 23 135 IPR036770 -
Lan6g1578 661 Gene3D - 9 151 IPR036770 -
Lan6g1578 661 Gene3D - 256 319 - -
Lan6g1578 661 PANTHER UNKEMPT FAMILY MEMBER 6 656 IPR045234 -
Lan6g1578 661 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lan6g1578 661 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lan6g1578 661 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lan6g1578 661 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lan6g1578 661 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 6 656 - -
Lan6g1578 661 Pfam Ankyrin repeats (3 copies) 50 124 IPR002110 GO:0005515
Lan6g1578 661 ProSiteProfiles Zinc finger C3H1-type profile. 256 283 IPR000571 GO:0046872
Lan6g1578 661 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 281 IPR000571 GO:0046872
Lan6g1578 661 SMART c3hfinal6 291 314 IPR000571 GO:0046872
Lan6g1578 661 SMART c3hfinal6 256 282 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1578 Lan-Chr6 23154955 23157756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1578 10 654 C2H2 Transcription Factor Family AT5G12850 38.280 1.63e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan6g1578 Ank_2 1.4e-06 CL0465