Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1574 ATGGCGGTGAAGAATTCTCGTAGCAAAAAGCGCAAAAGGGATCATGTCGATGGAAGCAAAAAATCAAAACTTCTTCTCAATGAACGGGTCGAGGTGAGGAGTGAGGAGGACGGTTTTCTGGGCTCATGGCACCCGGGGATAGTTATAAAGTTTGATAAGCTGAAGCGGCATGTCAGATATGATAATATTTTAGATGATAATGGGATGGATTATGTGGAAGTAGTCAATGTTACTGGTGCTTTGGATGGTGATATTAATTCTTCATATGTCTATACTCGCGGGTTGATTAGGCCACCGCCTCCTACGATTTCATTTGAGGGATGTGAACTTCAGTTTGGTCTGTGTGTTGATGCGAATCACGAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACTGTGATAGAATGAAGGAGAGGAGAGTGTTTTTCCCAGATTTGGGTGATGAAATGACTATTGGAATTCATCAATTGCGGATTACTCAGGATTGGGATGAAGTTACTCAGGTGTGGGAGCGACGAGGGAAGTGGGTTTTTCTTGAATTGATTGAGGAGTTTCACAGGGTATCACTTGTTTCAGTTTCAGCAAAGCAAATTTGGTACGATTTACGGACAAAAAAGGACTTTGACATGATTAGGGAGTGGACTTTGAATGTGAAGTTTTTATGGAGAGACCCGGTGATGAAGGTAATTAGAGATTACTTGACTGTTACACTTGAAGAAGTCTTGTCACGCTTAGACCTACCAAGTACTTTACTGAAAGAAACACAAGAGCTGGAGTCAGTTGAACCTACTGCTAATCCTGACTCCATTTGGGAAGTTGATCAGGCCAACCCTCTGGTTGTAAATTCTGGCAGCGAATTCATTGACAATACAAATTTTAATTGTATCGGTAGTCCTATTAATGCATTTGATTCTGAACTTGGAAAAGGTGACACTCCTCTGAAAAATGGCGACTCATTAAATTTGTCAGATACCGTTCAAAACTATGAGAAATGTAATATTGATCCCTTTGTCGGTGTGGAACCAGATATGCATCTTATGGCAGACTCGAATATGACCTTTACTGAAAAGGAAATTTTGGTGCAGGAAGAACCTATTCCTCCTATTCAAGAGGTCTTACCTGAGTTGCAGAAAGAAGCTTCCTGTCATGATGCTGGTGAAGTAGTTGCAGGTGCTAGTTCTGAAAAAAATGGAGAAAGTGGATGCTCAAGTTGTTCAGGGTCAAATTGGAATCCTCTGATACTGTCTGAAGTTCAATTTTGTCCTAATGCTGTTACAGAGTATGCGCTTGGAGTTCATCGTTCTAAGGCGAGAGATGAAGTATTGAAACATCTTGCATATCTTGGATGGGAAATTGAGTGGACATCACGTTACGATGGTAACCAATACAGGTATAGATACAAGTCACCTGATAAAAATGGGCAGAAGATTTATTATTCGCTTGTTATAGTATGTAATATGCTAATGGATTCCATGCTGTCCCAAAAGGATCAAAGTATGAACAATTCTACAGATGACAGCCATCTTTCACATGTTCTTAATCAATCGCAAAAGATTCAGAATATAGACATTCTTACACCGATTGTGCCACCTCTTGTGGAAGATACACATGACCCTGAGTTTTGCCCTGAAGCTGTTGTGGAATATTACTCGCATGCATCTGAGATGGACATGGCTGATAAAAGAAAGTTGATACTGAAAGCAAGGAAGCATCTGTTAGCAGTAGGATGGATCCTTACGGATCCACCTCCTGATAATAGAAGAAAGGGGGTGTTGTATACATCTCCAGAAAACCGGAGATTCCATTCACTCTACACTGCATGTGGTTTTTATATCCAAGAAAGTAATCCTAACATGACCATTTCTCCAAAGCGGAAGCGGAAATGCTTGAAGAATTCGAAGTCTAACCTACTTAAGTTTCAAAGCAACGGATTACCTCTAAGGGTGCTGCGATCAAGTAAAAGTGTGCAACAGGTGTCTACCCCTTGTCCATCTCACTATAAACCTCAAAATGTTCTGTCTTGGTTGATAGACAGCAACATGGTGTTACCAAGGTCTAAAGTTTATTACCAGGCGAAAGGTAGGAACCGGGCTTTGGCTGAAGGCCGAATAAGTCGTGATGGAATCAGGTGTACCTGTTGTCAAACAGTACATACTCTTGCCGGGTTTGAAAAACATGCTAGCAGCTATCGTACCAGCAGACCCGCTGCTAGTATCCATTTGGAAGATGGTAGGTCACTCTTAGATTGCCAGATACAAATAATGGAAGACTATAAGACAAGGGAAAGTATGGAAAAACCATGCAATGATTTATGTCAAAGTGAGAATGATTATCTTTGTTCTGTTTGCCACTATGGTGGTGACCTGATTTTATGTGATCAATGCCCATCTTCATTTCATAAGACGTGTCTTGGTTTGGAGGATATCCCTGATGGTGATTGGTTTTGTCCATCATGTCGATGTGGGATGTGTGGCCAAAGCAAAATTGATGGTGCTGAGGATGGACATTTCCTTACTTGCATTCAATGTGAACACAAGTATCATGTTAGGTGCCTGAGGAATAGAGATTTATGTAAATCGAGAAGTGATTTGGAAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATATGCAGCCTTGCATAAACTATTGGGAGAGCCAGTTTCAGTGGGTGTGGGAAATCTAACTTGGACATTGGTGAAGTCTATCACCTCTGAGAGTTGTGATCTCGATAGCACTGAAAATGAGCCATTGGCAGAAAATTTCAGCAAACTCAAGGTTGCTCTATCAGTGATGCATGAATGTTTTGAGCCCTTAAAGGAACCTTTCTCCAGCAGAGATCTTATGGAAGATGTTATATTTAGCAGATGGTCAAAGCTTAATCGATTAAATTTCAAGGGTTTCTATAATGTTCTTCTGGAAAGAAATGATGAACTGATTAGTGTGGCAACTGTCAGGGTCCATGGAAGGAAAGTGGCAGAAGTACCTCTTGTTGGTACTAGATTACAGTACCGTCGTCATGGAATGTGTCGCATTTTAATGAATGAGCTCGAAAAGAGGCTCGTGCAATTAGGAGTGGAAAGGCTAGTTTTGCCTGCTGTTCCTAGTGTGCTAGAAACATGGACAGGTTCTTTTGGCTTTGTAAAGATGACTAATTTAGAGAGGTCAGAATTTCTGGACTATACATTCTTAGATTTCCAGGGTACCATGATGTGCCATAAGCTTTTGATGAAGGTCCCGTCTCCAGATTCAGTTTTGTCAATAGAGTCCCAACAAAAACCACAGTATGCTTATTCTGGAAGTTGTATTATTAACTTTGGTAATTCCAGTCCAGTATCTGAATTATATCAAGCTGAAGAGATTGAGAAAAGAGGGATGATGTACCTTCAAATGGGCGATGATACTTGTGCAGGCAAAAATGATCATCTTGCTAGTGATGCTTGTGACCAGGTTACCATGGTGAAGCAACCAAATCAGGAGGAACAACAGTGCCAGAATGGAACCAGTCCCGAATGGTTACTTGAAAAACAAGATGACAGGTTTAGTGGCTCATTTAAGTTTTACAGACGAAGAAGACTCAGAAAGGCGCATCAGTAG 3597 0.4092 MAVKNSRSKKRKRDHVDGSKKSKLLLNERVEVRSEEDGFLGSWHPGIVIKFDKLKRHVRYDNILDDNGMDYVEVVNVTGALDGDINSSYVYTRGLIRPPPPTISFEGCELQFGLCVDANHEEAWWEGVIFDHCDRMKERRVFFPDLGDEMTIGIHQLRITQDWDEVTQVWERRGKWVFLELIEEFHRVSLVSVSAKQIWYDLRTKKDFDMIREWTLNVKFLWRDPVMKVIRDYLTVTLEEVLSRLDLPSTLLKETQELESVEPTANPDSIWEVDQANPLVVNSGSEFIDNTNFNCIGSPINAFDSELGKGDTPLKNGDSLNLSDTVQNYEKCNIDPFVGVEPDMHLMADSNMTFTEKEILVQEEPIPPIQEVLPELQKEASCHDAGEVVAGASSEKNGESGCSSCSGSNWNPLILSEVQFCPNAVTEYALGVHRSKARDEVLKHLAYLGWEIEWTSRYDGNQYRYRYKSPDKNGQKIYYSLVIVCNMLMDSMLSQKDQSMNNSTDDSHLSHVLNQSQKIQNIDILTPIVPPLVEDTHDPEFCPEAVVEYYSHASEMDMADKRKLILKARKHLLAVGWILTDPPPDNRRKGVLYTSPENRRFHSLYTACGFYIQESNPNMTISPKRKRKCLKNSKSNLLKFQSNGLPLRVLRSSKSVQQVSTPCPSHYKPQNVLSWLIDSNMVLPRSKVYYQAKGRNRALAEGRISRDGIRCTCCQTVHTLAGFEKHASSYRTSRPAASIHLEDGRSLLDCQIQIMEDYKTRESMEKPCNDLCQSENDYLCSVCHYGGDLILCDQCPSSFHKTCLGLEDIPDGDWFCPSCRCGMCGQSKIDGAEDGHFLTCIQCEHKYHVRCLRNRDLCKSRSDLENWFCGKDCEKIYAALHKLLGEPVSVGVGNLTWTLVKSITSESCDLDSTENEPLAENFSKLKVALSVMHECFEPLKEPFSSRDLMEDVIFSRWSKLNRLNFKGFYNVLLERNDELISVATVRVHGRKVAEVPLVGTRLQYRRHGMCRILMNELEKRLVQLGVERLVLPAVPSVLETWTGSFGFVKMTNLERSEFLDYTFLDFQGTMMCHKLLMKVPSPDSVLSIESQQKPQYAYSGSCIINFGNSSPVSELYQAEEIEKRGMMYLQMGDDTCAGKNDHLASDACDQVTMVKQPNQEEQQCQNGTSPEWLLEKQDDRFSGSFKFYRRRRLRKAHQ* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1574 1198 PANTHER PHD ZINC FINGER PROTEIN 617 1131 - -
Lan6g1574 1198 PANTHER PHD ZINC FINGER PROTEIN 8 622 - -
Lan6g1574 1198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 821 IPR013083 -
Lan6g1574 1198 Pfam PHD-finger 780 821 IPR019787 -
Lan6g1574 1198 ProSiteProfiles Zinc finger PHD-type profile. 777 822 IPR019787 -
Lan6g1574 1198 Gene3D - 924 1053 - -
Lan6g1574 1198 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 622 - -
Lan6g1574 1198 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 617 1131 - -
Lan6g1574 1198 SMART PHD_3 821 873 IPR001965 -
Lan6g1574 1198 SMART PHD_3 779 820 IPR001965 -
Lan6g1574 1198 CDD NAT_SF 971 1031 - -
Lan6g1574 1198 SMART agenet_At_2 108 165 IPR014002 -
Lan6g1574 1198 SMART agenet_At_2 22 85 IPR014002 -
Lan6g1574 1198 CDD PHD2_CHD_II 780 819 - -
Lan6g1574 1198 Pfam Tify domain binding domain 702 753 IPR032308 -
Lan6g1574 1198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 822 876 IPR013083 -
Lan6g1574 1198 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 931 1056 IPR016181 -
Lan6g1574 1198 SUPERFAMILY FYVE/PHD zinc finger 774 825 IPR011011 -
Lan6g1574 1198 Pfam Agenet domain 28 101 IPR008395 -
Lan6g1574 1198 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 913 1082 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1574 Lan-Chr6 23020545 23028760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1574 24 246 PHD Transcription Factor Family AT5G58610 45.217 6.02e-55 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan6g1574 Agenet 4.6e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1574 - - lang:109350262 2446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1574 6 23020545 23028760 Lan9g1200 9 19332705 19339501 LSH
Lan6g1574 6 23020545 23028760 Lan9g1200 9 19332705 19339501 PCT
Lan9g1200 9 19332705 19339501 Lan6g1574 6 23020545 23028760 PCT