Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1569 ATGGATGCATCAACCAGCGGCGGCGCCACCGCCACCGCCGCAAATTCGCCATCGCCGTCTCCGATTCTAAACGCAAACGCGCCGCCACCGTTCCTGAGCAAGACTTACGATATGGTTGATGATCCTTCAACCGATTCGATAGTATCATGGGGACCAACCAATAACAGCTTCGTTGTTTGGAATCCACCGGAATTCGCGAGAGATCTTTTGCCTAAGCATTTCAAGCATAACAATTTCTCAAGCTTTGTTCGTCAATTGAATACTTATGGTTTCAGAAAGGTAGATCCCGATCGTTGGGAATTTGCAAATGAGGGATTTTTAAGGGGTCAGAAGCACTTGCTTAGAAGTATAAATAGGCGAAAACCTGCCCATGGTCAAAATCATCAACAGGCACAGCAATCACATGGACAGAGCTCGTCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAGATTCTTAAGAGAGATAAGAATGTGCTTATGCAAGAGCTTGTGAAATTGAGGCAGCAACAACAGACTACTGAAGGTCAGATACAGACAATGGTTCAGCGCTTTCAGGTAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTCCAGAGCCCAGGGTTCTTTGCTCAATTCATAAAACAGCAAAACGAGAGTAATAGGCGTATAACTGATACAAACAAAAAACGTCGGCTCAAGCAGGACGGTATTGCTGAAATGGAACATTCTGCTGATTCTGATGGCCAGATTGTTAAATATCAACCACAGATAAATGAAGCGGCAAAAGCAATGATAATGCAGATCTTGAAATTGGGTACTTCTAACCTTAGTAACCCTGATAGTTACTTGATTGGTGATGATTTATCACCATCCAGTGCCAAGGACAGGGGAAATTCTTTGAGTCGGACTTCTGGAGTAACTCTTCAAGAGGTCCCTCCAGCTACGGTGCAGTCTTCTCACATTCCAGCTGCAATAGGGACTCAAGAACATGCCCCCTCAAAAGGGAAATATGAACCTCTATCTTCTCCTCAAGTTGCAGCCTGTGGAAATGGTATAAAAGCTCAATACCCTGAAATCAATGTTATGGTTGGAGCACCCAAGGTTCCTTCTATCCCTGTTTCTCAAGCAGATGTAATCATGCCTGACATTTCTCCAATACCAGATAGAGTGACAGGAAGTATTCTTGATATTCCTCAAGAAAATTATATGGCATCTGAGACAAACGGTGAGGGATATATGGATTCTTCTTCGCTAGGAGCTAACGGGTCGTTTCCCATTGATTTTGAAAGTATATCATCTGAAACTGACATTGATGATCTGTTTAGCAACCCTGCTTTTTGGGCTGATATTGTGCAAACTCCAGTGGCAGAGGATATTGATACCGACATTGCTGAATTACTCAAGGACAATCAGCTGCAACCAATAGAAAATGGGTGGGAGAAATCCGAACATATGGACCGACTTACAGAGAAAATGGGCAACCTTTCTTCTGATACAAAAGGAGTTTGA 1527 0.4361 MDASTSGGATATAANSPSPSPILNANAPPPFLSKTYDMVDDPSTDSIVSWGPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRSINRRKPAHGQNHQQAQQSHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVKLRQQQQTTEGQIQTMVQRFQVMEQRQQQMMSFLAKAVQSPGFFAQFIKQQNESNRRITDTNKKRRLKQDGIAEMEHSADSDGQIVKYQPQINEAAKAMIMQILKLGTSNLSNPDSYLIGDDLSPSSAKDRGNSLSRTSGVTLQEVPPATVQSSHIPAAIGTQEHAPSKGKYEPLSSPQVAACGNGIKAQYPEINVMVGAPKVPSIPVSQADVIMPDISPIPDRVTGSILDIPQENYMASETNGEGYMDSSSLGANGSFPIDFESISSETDIDDLFSNPAFWADIVQTPVAEDIDTDIAELLKDNQLQPIENGWEKSEHMDRLTEKMGNLSSDTKGV* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1569 508 Coils Coil 149 176 - -
Lan6g1569 508 MobiDBLite consensus disorder prediction 121 140 - -
Lan6g1569 508 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 6 494 - -
Lan6g1569 508 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 494 IPR027725 -
Lan6g1569 508 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1569 508 MobiDBLite consensus disorder prediction 293 313 - -
Lan6g1569 508 SUPERFAMILY "Winged helix" DNA-binding domain 26 120 IPR036390 -
Lan6g1569 508 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g1569 508 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1569 508 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1569 508 MobiDBLite consensus disorder prediction 1 27 - -
Lan6g1569 508 Gene3D - 23 121 IPR036388 -
Lan6g1569 508 MobiDBLite consensus disorder prediction 123 140 - -
Lan6g1569 508 MobiDBLite consensus disorder prediction 298 313 - -
Lan6g1569 508 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1569 508 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1569 508 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1569 Lan-Chr6 22880056 22883709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1569 3 505 HSF AT1G32330 51.072 4.92e-160 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan6g1569 HSF_DNA-bind 1.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1569 K09419 - gmx:732544 712.605