Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1563 ATGGCGTCTGAAGGTGGTTTCAGCGACAAGAACACCGTCTTCAGAAAACTTAAGGCCAAATCCGAAAATAAGATTTGTTTCGATTGCAACGCGAAGAACCCTACTTGGGCTTCAGTTACGTATGGGATTTTTCTCTGCATCGATTGCTCTGCTGTTCATCGCAGTCTCGGCGTCCATATCAGCTTTGTCAGATCTACGAATTTAGACTCATGGAGTCCCGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAGCATGGTTGGACTGATGGTGGTAAAATAGAGGGAAAGTACACATCCAGAGCTGCAGAGTTGTATAGGCAGATTCTTTTGAAGGAAGTAGCGAAAAGTATGGACGAGGAGGCAGTTGTTCCATCCTCACCTTTTGCTTCCCAGTTTTCCCAAGGGACTAATGAACTTCCTGAAGTCAAGACCAATGAACCACCAAAACAGAACACTCTGGAGAAAAATGGAAAACTTGAGAGCACTTCTTCACCTAGAGTTTCCTATACATCAGTTTCAAGTACCATCAAGAAGCCTATTGGTGCTAAAAAACCTGGGAAGAGTGGGGGGCTTGGTGCCCGTAAGCTGACTAGAAAGCCAAGTGAGTCTCTCTATGAGCAAAAGCCTGAAGAAGCACCTACTCCAGTTACATCCTCGGCAAACAACAACTTGCCTGCTGCGCCATCTTTGACATCTCGGTTTGAGTATCTAGAAAATGTCCAATCATCTGATTTCAATGCTGAAGGTTCACATGCAACTGGTCATGTGTCTGCGCCAAAATCAACAAGCTTCTTTTCAGATTTTGGAATGGATAATAGCTTTCAAAAAAAATCTGGACCAAGCTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCGAGAAAAAAGTTTTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGACCAGGACAAAGCAGATGCAGAGGCTAAAGTTACACTGTCAAAGTTTTCAGGTTCATCTTCCATCTCCAGTGCTGATCTATTTGGTAACTCAAGAGATAACTCCTCCATTGATATTACTGCGAGTGAGCTCCTAAGTCGTTTATCTTTCCAGGCACAACATGATATATCTTCTCTTAAAGATATTGCTGGAGAGACAGGAAAGAAGCTGAGTTCTTTAGCTTCCAGTTTTATGACAGATCTACAGGACAATATCCTCTAA 1218 0.4236 MASEGGFSDKNTVFRKLKAKSENKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAQVFFKQHGWTDGGKIEGKYTSRAAELYRQILLKEVAKSMDEEAVVPSSPFASQFSQGTNELPEVKTNEPPKQNTLEKNGKLESTSSPRVSYTSVSSTIKKPIGAKKPGKSGGLGARKLTRKPSESLYEQKPEEAPTPVTSSANNNLPAAPSLTSRFEYLENVQSSDFNAEGSHATGHVSAPKSTSFFSDFGMDNSFQKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQDKADAEAKVTLSKFSGSSSISSADLFGNSRDNSSIDITASELLSRLSFQAQHDISSLKDIAGETGKKLSSLASSFMTDLQDNIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1563 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lan6g1563 405 Gene3D Arf GTPase activating protein 3 136 IPR038508 -
Lan6g1563 405 MobiDBLite consensus disorder prediction 284 307 - -
Lan6g1563 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 405 - -
Lan6g1563 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 405 - -
Lan6g1563 405 CDD ArfGap_ArfGap2_3_like 9 124 - -
Lan6g1563 405 MobiDBLite consensus disorder prediction 221 236 - -
Lan6g1563 405 MobiDBLite consensus disorder prediction 135 186 - -
Lan6g1563 405 MobiDBLite consensus disorder prediction 134 236 - -
Lan6g1563 405 Pfam Putative GTPase activating protein for Arf 12 99 IPR001164 GO:0005096
Lan6g1563 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 124 IPR037278 -
Lan6g1563 405 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Lan6g1563 405 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lan6g1563 405 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lan6g1563 405 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1563 Lan-Chr6 22838217 22844565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1563 14 92 C2H2 Transcription Factor Family AT4G21160 46.250 4.97e-20 88.6