Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1557 ATGGATCCTGATGGTCGCTATGGTCCGCGTCAAGGCTGGGATAATAACAACAGCGCTCTTGAGGGTTACGCTGAGGTCCGGGAGCCAAATTTTCGGGTTGGAGGATCTTATGATGAAAGTCGGTTTATAGATGAAAGATATCCAAGGGATGGCACATACCAGAGAAATAATTTCCATCGCGACATTTTGGATGGGGAATCCTATCTGCCACCAGGATCTGCAGCTGGACACTGGAGCCAGTCCAAACGGAGAGGTTATGATGAAGATTATCCACTCGACAAGGAATCCAGACGTTTTCAGAGGCCATATCATGAATCATATAATCAGGTTAATGCTTTCAGGGACCGTGAGATTGAGACATACCCACCATATGATAAGTTTCGTGATGGCTATGGTAGCATTGATAACTATGGTGATCAAGCATATGATAAACCTGACAGGTTTGCAGGACCTGACCGCAATGATTATGAGTATGATGATCATGGCTACAAGTCCCGTCTTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATAATCATGGTCGTCATAGTTATGATTCTGACTACGAAGGAGGTAGTAGAAGAGATAATAATCGGAGGCGGCACGAATCCCGTGATCGGGAACGTGGGAGTAGAGATATTAGTCGGGAAAGGGATTTGAGTCCACGTAGGAGGCATGAGCGTTCCCGTTCTCGATCACGGTCCCAATCCAATTCCCGTTCCCGTTCCCTTTCTCGTTCCCATTCCCAATCTCGTGGATATGATTATGAGGATCATCCAAGATCAAAGTCCCCTCGAGGTCGAAGCCATAGCCGAAGTTATCGAGAAGACAGCTATGTTGACAGTCGATATGATAGAAGTGAAAGACGTAGGGATCGTGAGGACAAGCATCAGCGTGAACATTATTCTGTGGCTCCATCTCCAACTGTTGTTGTGAAGGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAGTCGGGTCCCCTTCGTCATGTTCGTATTATAAGGGAGAGAAATTCTGGCATCTCTAGAGGATTTGCATTTATCGATTTTCCTTCTGTGGGAGCTGCACAAGGAATGATGGAAAAACTAGGAGATGATGGTCTTGTTGTGGATGGGAGAAAGCTTTTCTTTGAATATAGTAAGCCAACTGGAGGTCCAGGTCCCGATGGAGCTATTAAATCTGGTCATAATCATAAGATGATTACAGTACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGCCGGAGTTCATGCTATCAGTGTAACGAGCCACGAACTGAGGATGCTCCTGCAGCGGATATTTCATCATCAAATTCAACATTCTTAGGAAGGAAAGGTTTGGAGGCAGGTCCAACTCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAGATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAGGATCTGCGTCTTGTGAGGGACAAGTTTACTCATGTGTCAAGGGGATTTGCATTTGTACACTTTCATTCGGTGGAGGATGCTACAAAAGCTCTTGGGGCAACAAATGGAACAACCCTTGAGAAGAATGGGCAAATTCTAAGAGTAGCATATGCAAAAAGTATCCTGGGCCCTGGATCAGGAGCTTCTTCCCAATCGAGCAGTCTTGCAGCTGCTGCTATCGAGGCTGCAACATTTGCTCAACAGTATGATACCGTGGGATGGGCTCCAAAAGAATATAATCCAGATGACAAACAATTTGCTGGTCCAGAGCAAACTGGCACAGAAGTTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCGTCAGGTTATTACTACGATGCTGCTTCTGGGTTTTACTATGATGGGAATACTGGTCTGTACTATGATGGTAATAATGGGATTTGGTATTCATATGACAACCAAACTCAGCAGTACATGCCTTGCACTGACCAAAATCAGAATAAAACAGATAATAACCTGTCTGAACCTTCCAAAGCATCTGATGGTTCCAGCAGTAAAAAAGTGGTGATTTCTGCGCCAGTAATTACCGTTGCATCAGTTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCTGCAGCAGCTGCTTTTGCTGCAGAGAAAAAGGAAAAAGAAAAATTAAAGGAGATAAAACTTGCCTCAAAAAGCAGTATTCTGGCGAACAAGAAAAAAATGAACAATGTGTTGACAATGTGGAAGCAGAGGAGCCATGAGGGTCAGACTACTCGAGTGGCTCTGGAAGATAATCAGCTCTCTATATCAGCTGATGATAAACATTCTTCAGGACATTCTGTAAAGAATAAGTTAAAAAGTGAGACTTTGGCAAGGGAAAGTAATGCATCTACTATGGGAGTTCACAGAAGTGTTAACCAGGCCATTGCTTTGGATCCTCAGCCACAGCCCCGACCAGTTAGTAATAGCCTTGGTGGCTCTGTGATGGGGGTTATAAGGGGCTCGGGAAGAGGGGTTGTTAAATCAGATACTTCTTATTCGGGTTCTGCAGCTGCCACATCATCTATGTCAAGTTCATTTTCAGCAAATGTTGATGCACAGACAATTTCTACTCCCTTTAAAACAGATGTCTCTGCCCTGAGTTCACATACACCATCTGTGGCTTCTGTAAGTGGCAGACGAAGGTTTTCAGAAATGCCCTATTCTGCTTCAAATAACAAGGAACAATTTCAAACAACCTACAGGGATCGCGCAGCTGAGAGGAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGGAATGATTTGGCTGACCTTGAAATTGGGGATTCAAATCGAGAATTTGCTTCAAGGAAGGGTGACCCGATGCCTTTCCCTCCTGGGGTTGGTGGAGGACGAGTGGTTGGAGATGTTAACCTTGATACTTATGAGGTGATTACGGCAGACAAAGCAATTGATGAAAGCAATGTTGGCAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGACTTGGAAAGGATGGAAGTGGAATGGTAGAGCCTGTGCAGGCACTAGGGATGGAGAATAGAGCAGGACTTGGGAGTCAGCACAAGAACTTGGATCCTAGCCTTGAAGTGCAGGCAGGGGATAGTTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGATTTAGGGACATGTAA 3183 0.4502 MDPDGRYGPRQGWDNNNSALEGYAEVREPNFRVGGSYDESRFIDERYPRDGTYQRNNFHRDILDGESYLPPGSAAGHWSQSKRRGYDEDYPLDKESRRFQRPYHESYNQVNAFRDREIETYPPYDKFRDGYGSIDNYGDQAYDKPDRFAGPDRNDYEYDDHGYKSRLSHHRREDSHERDYNHGRHSYDSDYEGGSRRDNNRRRHESRDRERGSRDISRERDLSPRRRHERSRSRSRSQSNSRSRSLSRSHSQSRGYDYEDHPRSKSPRGRSHSRSYREDSYVDSRYDRSERRRDREDKHQREHYSVAPSPTVVVKGLSQKTTEEDLYQILAESGPLRHVRIIRERNSGISRGFAFIDFPSVGAAQGMMEKLGDDGLVVDGRKLFFEYSKPTGGPGPDGAIKSGHNHKMITVPSDWMCTICGYINFARRSSCYQCNEPRTEDAPAADISSSNSTFLGRKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALGATNGTTLEKNGQILRVAYAKSILGPGSGASSQSSSLAAAAIEAATFAQQYDTVGWAPKEYNPDDKQFAGPEQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDNQTQQYMPCTDQNQNKTDNNLSEPSKASDGSSSKKVVISAPVITVASVEKPASLADAVQAAAAAAFAAEKKEKEKLKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQTTRVALEDNQLSISADDKHSSGHSVKNKLKSETLARESNASTMGVHRSVNQAIALDPQPQPRPVSNSLGGSVMGVIRGSGRGVVKSDTSYSGSAAATSSMSSSFSANVDAQTISTPFKTDVSALSSHTPSVASVSGRRRFSEMPYSASNNKEQFQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSNREFASRKGDPMPFPPGVGGGRVVGDVNLDTYEVITADKAIDESNVGNRMLRNMGWQEGLGLGKDGSGMVEPVQALGMENRAGLGSQHKNLDPSLEVQAGDSYKMLIHKKALARFRDM* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1557 1060 CDD OCRE_SUA_like 603 655 IPR035623 -
Lan6g1557 1060 CDD RRM1_RRM2_RBM5_like 464 544 - -
Lan6g1557 1060 SUPERFAMILY Ran binding protein zinc finger-like 405 441 IPR036443 -
Lan6g1557 1060 Gene3D - 407 441 - -
Lan6g1557 1060 ProSiteProfiles G-patch domain profile. 985 1031 IPR000467 GO:0003676
Lan6g1557 1060 ProSiteProfiles Zinc finger RanBP2 type profile. 411 440 IPR001876 -
Lan6g1557 1060 Pfam OCRE domain 606 654 IPR041591 -
Lan6g1557 1060 SUPERFAMILY RNA-binding domain, RBD 300 396 IPR035979 GO:0003676
Lan6g1557 1060 PANTHER RNA-BINDING PROTEIN 224 1060 - -
Lan6g1557 1060 PANTHER RNA-BINDING PROTEIN 41 219 - -
Lan6g1557 1060 SUPERFAMILY RNA-binding domain, RBD 464 550 IPR035979 GO:0003676
Lan6g1557 1060 Pfam G-patch domain 986 1027 IPR000467 GO:0003676
Lan6g1557 1060 Gene3D - 289 402 IPR012677 -
Lan6g1557 1060 Gene3D - 450 571 IPR012677 -
Lan6g1557 1060 MobiDBLite consensus disorder prediction 653 679 - -
Lan6g1557 1060 SMART rrm1_1 311 386 IPR000504 GO:0003723
Lan6g1557 1060 SMART rrm1_1 467 542 IPR000504 GO:0003723
Lan6g1557 1060 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g1557 1060 MobiDBLite consensus disorder prediction 69 309 - -
Lan6g1557 1060 MobiDBLite consensus disorder prediction 81 102 - -
Lan6g1557 1060 PANTHER FI21118P1 224 1060 - -
Lan6g1557 1060 PANTHER FI21118P1 41 219 - -
Lan6g1557 1060 MobiDBLite consensus disorder prediction 768 798 - -
Lan6g1557 1060 MobiDBLite consensus disorder prediction 774 788 - -
Lan6g1557 1060 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 546 IPR000504 GO:0003723
Lan6g1557 1060 MobiDBLite consensus disorder prediction 238 252 - -
Lan6g1557 1060 SMART zf_4 413 437 IPR001876 -
Lan6g1557 1060 MobiDBLite consensus disorder prediction 140 228 - -
Lan6g1557 1060 ProSitePatterns Zinc finger RanBP2-type signature. 415 434 IPR001876 -
Lan6g1557 1060 SMART G-patch_5 983 1029 IPR000467 GO:0003676
Lan6g1557 1060 MobiDBLite consensus disorder prediction 586 605 - -
Lan6g1557 1060 CDD RRM1_RRM2_RBM5_like 308 388 - -
Lan6g1557 1060 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 390 IPR000504 GO:0003723
Lan6g1557 1060 MobiDBLite consensus disorder prediction 253 304 - -
Lan6g1557 1060 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 534 IPR000504 GO:0003723
Lan6g1557 1060 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 371 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1557 Lan-Chr6 22765063 22773450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1557 964 1032 C2H2 Transcription Factor Family AT5G26610 42.029 2.36e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1557 K13094 - gmx:100777686 1527.69