Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1551 ATGAGTTCCTTCTCCATAACAAGGAAGAAGACACCATTCCAGAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGAAGAAGACGAGACTGCTCGCTTATATGCCGAATTTGTGGAGTCATTTCAAGGGGATACTGCTCCTGGGTCAAAGACTTTTGTTCGCGGAGGAACAATTAATCCCAACGATAATTTGAAAGATGACTTAGATGGTGAAAAGTCCAAAGGTGGGGTATCTGGTTCAAAGAAGGGAAGTAGGTATGTACCTTCTTTTCTGCCGCCTCCATTGGCAACCAAGGGAAAGGAACCTGAAAGGAAAAAGGAGGAGGAGAAGCCAAAGGAGAAAGAGAAAGGAAAGTCAAGGAACATTGACCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGAACGTGATCGTGATGGGCACACAGTAGACTATTCTATTTCGAGTCGCTTTGACGAACTACCAGATGAATTTGATCCCACTGGAAAACTTCTGGGATCATTTGATGATGGTGATCCACAAACAACAAATCTTTATGTTGGAAATCTCTCACCCCAGGTTGATGAAAATTTTCTTCTCCGTACGTTTGGAAGATTTGGACCTATTGCTAGTGTAAAGATAATGTGGCCTAGGACAGAGGAGGAGCGAAGGAGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGGCAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTACGAGTATGAACTGAAAGTTGGTTGGGGAAAATCTGTTTCCCTCCCATCGCAAGCACTACCTGCACCTCCACCAGGACACATGGCCATCAGGAGTAAGGAGGGTAATACTGTGATCTTGTCTGGCCCATCAGGTCCACCAGTAACTTCAGTGCCTAATCAGAACGCCGAACTGGTTCTTACTCCTAATGTTCCTGACATAATGGTTACACCTCCTGCGGATGACCATCTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAGCAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTTTTCAATTTCTTGTTTGTTCTTGGTTCGAAGGAACATACCTACTATGTTTGGAGACTTTACTCATTTGCTCAGGGTGATACATTTCAAAGATGGCGCACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGGTTCCGCCCTCATTGCCAACAGCAAAAAGTCCAGAACATGAAAAGGAGTCCGGTCTCACACACGCTGGAGGAAAAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTCCGTGCTTTAACATTGGAGAGAAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTGGACAATGCTGATGCAGCTGGTGAGATAGTTGAGGTTTTAACTGAATCCTTGACACTTAAAGAAACCCCTATTCCAACTAAAATTGCAAGGCTTATGCTTGTGTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCATCAGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGATTTGTATCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGAGTACTGAAAGTTTTGCAAGTATGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGTTTACGAGCCACTTTCCTTCGCTCTGGGAACTCTGGTGTGATACCTTTCCATTCCATATGTGGTGACGCACCTGAGGTTGAGCAGAAGGTCACTTCTGAGGATATGGTTATCGGTGGCAAAACCAACCCAGATGCTGCATTGGCAATGGGTCGAGGAGCAGCAACGAAGGAGCTAATGAGTCTTCCTCTTGCTGAGCTTGAAAGACGTTGCCGACACAATGGATTGTCGCTTGTTGGTGGTAGAGAAGTGATGGTTGCTCGGTTGCTAAGTCTCGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGGTGAATTGAAGCATGCCCAAAACCAAGCAAATTCAGGGAAATATCAGAGCAGTCGGCGAGAAACAAGTGCTGAGCCTGAAACAGTGGGATTGCCTGCTTGGAATCGCTTTGGTGATGAAGCTTTGCAGTCGCAAGGCAAAGGGTCTGTACCTTTAGTGCCAACCCTTTCTATTCCACAGCCTGAACTAAAAGCCTTCACAAAAAAGGAGAAGAGTGATCCTGTTTTGCCTGCCTCTAAATGGGCTCGGGAGGATGACGAAAGTGATGATGAGCAAAGGGGAAGTGGAAAGAATTTTGGGTTAAGTTACTCATCTTCTGGTAGTGAGAATGCAGATGAAGGTCTTATTAAAGCTGATGAGTTGGAGTCAGCTGTTGATACACGATTGTCAGCTCATGCTGACAGTGGAATGAATGACGAGCAAAGGCAAAAGTTGAGACGCTTGGAGGTTGCTTTAATCGAATATCGTGAGTCTCTTGAAGAAAGAGGGATTAAAAATTTGGAAGAAATTGAGAAGAAAGTTGCAACATACCGGAAACAATTGGAAGTGGAGTATGGGCTATCAGATTCTGGTGAAGATGGTCAAGGCAAAAGAAGAACATCTTCAGAGAGGAGGGATGGGCATGATGTCTCAAGGAAGCGGCACCGCACTCATAGTCCAAGCAATAGCCCGCAGCAGAAATTATCAGGCAAAGTCAGAGATAGAGAACATGATTTAGAAAGGGGTCGAGACAGACATAGAGATAGAACTCATGATTTTGATAGCGATAGAGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCAGAGAGAGGGAGGATCATGATAAGGAGAGAGGCCGGGACCGCGAAAGGAGAAGACGGATCAAATAA 2910 0.4498 MSSFSITRKKTPFQKHREEEEAKKKREEDETARLYAEFVESFQGDTAPGSKTFVRGGTINPNDNLKDDLDGEKSKGGVSGSKKGSRYVPSFLPPPLATKGKEPERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQERDRDGHTVDYSISSRFDELPDEFDPTGKLLGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKVGWGKSVSLPSQALPAPPPGHMAIRSKEGNTVILSGPSGPPVTSVPNQNAELVLTPNVPDIMVTPPADDHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTFQRWRTEPFIMITGSGRWVPPSLPTAKSPEHEKESGLTHAGGKSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVIPFHSICGDAPEVEQKVTSEDMVIGGKTNPDAALAMGRGAATKELMSLPLAELERRCRHNGLSLVGGREVMVARLLSLEEAEKQRGYELDGELKHAQNQANSGKYQSSRRETSAEPETVGLPAWNRFGDEALQSQGKGSVPLVPTLSIPQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRGSGKNFGLSYSSSGSENADEGLIKADELESAVDTRLSAHADSGMNDEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVATYRKQLEVEYGLSDSGEDGQGKRRTSSERRDGHDVSRKRHRTHSPSNSPQQKLSGKVRDREHDLERGRDRHRDRTHDFDSDRGRDRHREKSGSREREDHDKERGRDRERRRRIK* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1551 969 SMART 558neu5 448 583 IPR006569 -
Lan6g1551 969 MobiDBLite consensus disorder prediction 45 59 - -
Lan6g1551 969 Pfam cwf21 domain 819 862 IPR013170 -
Lan6g1551 969 Gene3D - 97 268 IPR012677 -
Lan6g1551 969 Pfam Surp module 331 383 IPR000061 GO:0003723|GO:0006396
Lan6g1551 969 MobiDBLite consensus disorder prediction 862 969 - -
Lan6g1551 969 Pfam CID domain 448 576 IPR006569 -
Lan6g1551 969 MobiDBLite consensus disorder prediction 415 440 - -
Lan6g1551 969 MobiDBLite consensus disorder prediction 744 799 - -
Lan6g1551 969 Coils Coil 818 838 - -
Lan6g1551 969 Gene3D Surp module 319 388 IPR035967 GO:0003723|GO:0006396
Lan6g1551 969 SUPERFAMILY ENTH/VHS domain 445 583 IPR008942 -
Lan6g1551 969 ProSiteProfiles CID domain profile. 441 586 IPR006569 -
Lan6g1551 969 MobiDBLite consensus disorder prediction 744 774 - -
Lan6g1551 969 MobiDBLite consensus disorder prediction 410 440 - -
Lan6g1551 969 PANTHER RNA PROCESSING PROTEIN LD23810P 5 965 - -
Lan6g1551 969 Coils Coil 17 37 - -
Lan6g1551 969 CDD RRM_SR140 183 266 IPR035009 -
Lan6g1551 969 SMART rrm1_1 185 261 IPR000504 GO:0003723
Lan6g1551 969 MobiDBLite consensus disorder prediction 65 79 - -
Lan6g1551 969 SMART cwf21_2 817 866 IPR013170 -
Lan6g1551 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 265 IPR000504 GO:0003723
Lan6g1551 969 Coils Coil 446 466 - -
Lan6g1551 969 MobiDBLite consensus disorder prediction 685 704 - -
Lan6g1551 969 MobiDBLite consensus disorder prediction 775 791 - -
Lan6g1551 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 258 IPR000504 GO:0003723
Lan6g1551 969 Gene3D - 817 868 - -
Lan6g1551 969 SMART surpneu2 331 385 IPR000061 GO:0003723|GO:0006396
Lan6g1551 969 MobiDBLite consensus disorder prediction 871 890 - -
Lan6g1551 969 SUPERFAMILY Surp module (SWAP domain) 310 389 IPR035967 GO:0003723|GO:0006396
Lan6g1551 969 MobiDBLite consensus disorder prediction 11 35 - -
Lan6g1551 969 MobiDBLite consensus disorder prediction 681 712 - -
Lan6g1551 969 PANTHER - 5 965 - -
Lan6g1551 969 Gene3D - 441 588 IPR008942 -
Lan6g1551 969 MobiDBLite consensus disorder prediction 99 123 - -
Lan6g1551 969 SUPERFAMILY RNA-binding domain, RBD 178 274 IPR035979 GO:0003676
Lan6g1551 969 MobiDBLite consensus disorder prediction 1 123 - -
Lan6g1551 969 ProSiteProfiles SURP motif repeat profile. 333 376 IPR000061 GO:0003723|GO:0006396
Lan6g1551 969 MobiDBLite consensus disorder prediction 909 962 - -
Lan6g1551 969 ProSiteProfiles SAP motif profile. 635 669 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1551 Lan-Chr6 22702473 22716162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1551 181 261 Eukaryotic Initiation Factors Gene Family AT1G71770 33.333 1.94e-06 50.1