Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1542 ATGGATTCTATTCAAACCCCAAACAACCCCACCACCACTTTTCTACCTCCACCCCCTGGCCTCCACATTCCCACCACCACCACCGCCGTCGCAGCCACTTCCTCCGGCGGCGGAGTTTCAATCCCTAGTTTGAAAGTTCCAAAGCCTGAACCTTTTGATGATTCCGACGTCGAAAAACAACTCCAATTGTACTCTGACTTCTGTCGTGTCTCGAATCTTTTCCGTGAGGCTTTTGGGAACGTTGATTTTCCCGGTGACCTTGATTCGGAGCTTGTTGATGTTAAGGTTTCCATTTCTGACCCTAATGGGGTTGTGGATTTGAACCTTCCTGCTCCGAATTCGCAGCCGGAGGAGGAAATTTCGGGTTTTTTGGACCCTGATTCGGGTGCAATTGTTCCAGTGCCTCCCAATCAGGAGATTGCGGTTACCACGCCGAGGCGAAAGCAGAGCCGTGTGAAGGAGCTGGTGAGGGTGATGGATCTTGGACTGAAGGATCAGGTGCATTTTAGGGAGGTGGTTAGGAAGACTAGGATGGTGTATGAGTCGCTGCGTGTGTTGACATCAGTCGAGGAGGAGAAAAGAGTGGTCGCTGCCGCTGAAGAGGAGAAAAGAATGCTTGCTGCCATGGCTGCTGCTGCTGCTGCTTCGGCTGCTGCTGCTGCTGCTTCGGCTGCTGCTGCTTCTTCGGCTGATGGTGTTGCTGCAGGCATTGGAATGCCGGAGGGAAGTGGCAGCAATGGAAGCAGGACTTATCGGAGGCTGCGGCTTCGAGGGGACTTGAGGGCAGCATCATTGATGAGGGATCAAGGTTTGTGGCTGAACCGCGATAAGCGGATTGTTGGCGCGACTCCAGGTATATATGTTGGTGATATATTCTTGTTTAGGATGGAATTGTGTGTGCTTGGGTTGCATGGTCAGATACAGGCTGGGATTGATTACCTTCCTGGTAGCATGAGCTCCAATGGAGAGCCAATAGCTACTAGTGTTATTGTTTCGGGTGGGTATGAGGATGACTTGGATGATGGTGAAGTTATAGTGTACACTGGTCAAGGTGGGCAAGAGAAGAATTCTTTCAGGCAAGCTTCTCATCAGAAGCTGGAGGGAGGTAATCTTGCGTTGGAAAGGAGTATGCATTATGGGATTGAGGTGCGGGTCATTCGTGGGGTGAGGTATGAGGGAAGTGCATCGTCGTCTGGTAAGGTTTATGTTTATGATGGACTGTATAAGATTGTTGATTGTTGGTTTGATGTGGGGAAATCTGGTTTCGGAGTTTTTAAGTATAAGCTTTGGAGAATTGAAGGGCAAGAGAAGATGGGTAGTGCTATTCTTAAAGAAGCCCGGGCGATTAGGAGAAGTGGATTTGATTTCAAACCCATGTATTGTCTCTCTGTTGATATTTCAAACCGTAAGGAGAACGTCCCTGTCCGGCTTTTTAATGACATAGATGACAATCAGGATCCTCTTTGTTTTGAGTATCTTACCAGGACAACTTTTCCTCAATTTGTATTCCATCAAAGTGGAAAGGCCACTGGTTGCGATTGTGTGGACGGTTGCACTGATGGGTGCTTTTGCTTTATGAAAAATGGGGGTGAGTTTCCGTATAATCAACATGGGATTCTCGTCCGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCGGTTGTCCTCCTCATTGTCGGAATCGTGTTACACAAAAGGGGCTGAAGAATAGGTTGGAAGTGTTTAGGTCTAGGCAGACAGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAGGCTGGTGCTTTTATCTGTGAGTATGCTGGGGTTGTTTTGACTAAGGAGCAAGCACAGATTTTGACAATGAGTGGTGGTGACTCATCGATACATCCTAATCAGTTTTCTGACAGGTGGGCAGAATGGGGGGATATATCTCAAGTATATTCTGATTATGTCCGTCCGTCATATCCATCGGTTCCTCCTTTAGATTTTTCTTTGGATGTGTCAACTATGAGAAATGTTGCTTGCTATATGAGCCATAGTTCAACCCCAAATGTGTTTGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACGCTATGGTATTTGCGATGGAGAACATCCCTCCAATGAGAGAGCTCAGCCTTGATTATGGGGTACCTGACGAGTGGACAGGCAAGCTCTCTATATGTAACTGA 2187 0.4742 MDSIQTPNNPTTTFLPPPPGLHIPTTTTAVAATSSGGGVSIPSLKVPKPEPFDDSDVEKQLQLYSDFCRVSNLFREAFGNVDFPGDLDSELVDVKVSISDPNGVVDLNLPAPNSQPEEEISGFLDPDSGAIVPVPPNQEIAVTTPRRKQSRVKELVRVMDLGLKDQVHFREVVRKTRMVYESLRVLTSVEEEKRVVAAAEEEKRMLAAMAAAAAASAAAAAASAAAASSADGVAAGIGMPEGSGSNGSRTYRRLRLRGDLRAASLMRDQGLWLNRDKRIVGATPGIYVGDIFLFRMELCVLGLHGQIQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDLDDGEVIVYTGQGGQEKNSFRQASHQKLEGGNLALERSMHYGIEVRVIRGVRYEGSASSSGKVYVYDGLYKIVDCWFDVGKSGFGVFKYKLWRIEGQEKMGSAILKEARAIRRSGFDFKPMYCLSVDISNRKENVPVRLFNDIDDNQDPLCFEYLTRTTFPQFVFHQSGKATGCDCVDGCTDGCFCFMKNGGEFPYNQHGILVRGKPLIFECGPFCGCPPHCRNRVTQKGLKNRLEVFRSRQTGWGVRSLDLIQAGAFICEYAGVVLTKEQAQILTMSGGDSSIHPNQFSDRWAEWGDISQVYSDYVRPSYPSVPPLDFSLDVSTMRNVACYMSHSSTPNVFVQFVLYDHNNLMFPHAMVFAMENIPPMRELSLDYGVPDEWTGKLSICN* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1542 728 SUPERFAMILY PUA domain-like 262 444 IPR015947 -
Lan6g1542 728 ProSiteProfiles Pre-SET domain profile. 510 568 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan6g1542 728 Pfam Pre-SET motif 466 563 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan6g1542 728 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g1542 728 Gene3D SET domain 440 728 IPR046341 -
Lan6g1542 728 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 47 725 - -
Lan6g1542 728 Pfam SET domain 582 715 IPR001214 GO:0005515
Lan6g1542 728 ProSiteProfiles YDG domain profile. 281 431 IPR003105 -
Lan6g1542 728 MobiDBLite consensus disorder prediction 30 53 - -
Lan6g1542 728 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 47 725 - -
Lan6g1542 728 SMART preset_2 463 555 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan6g1542 728 SMART set_7 571 721 IPR001214 GO:0005515
Lan6g1542 728 SMART G9a_1 276 435 IPR003105 -
Lan6g1542 728 Pfam SAD/SRA domain 280 435 IPR003105 -
Lan6g1542 728 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 53 728 IPR025794 GO:0016571
Lan6g1542 728 ProSiteProfiles SET domain profile. 571 715 IPR001214 GO:0005515
Lan6g1542 728 Gene3D - 278 439 IPR036987 -
Lan6g1542 728 Coils Coil 189 209 - -
Lan6g1542 728 SUPERFAMILY SET domain 456 727 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1542 Lan-Chr6 22573202 22583580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1542 257 716 Su(var)3-9 homologs AT5G04940 41.702 7.08e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan6g1542 SAD_SRA 2.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1542 K11420 - gmx:100785015 927.161