Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1511 ATGACTCGCACTCTTAGAATCCTCCAATCCATTAACAACGCCACCGCGCCACCGTCGCCGGAAACACCATCCACCGAATCAGACTATGTCGTAATCCTCGCCGCCCTTCTATGCGCCCTCATCTGCGTCGTGGGTCTCATCGCCGTTGCCCGCTGCGCATGGCTCCGCCGTAGCTCAGTCCCCACCGTCGCCGGTAACTCTCCGACACAGACCTTAGCAAACAAAGGCCTCAAGAAGAAGGTCCTCAATTCACTTCCCAAGTTCACCTATCTCGACGGCGACGCCGGCGGAAACAACGGCAACAAATGGGTACCCACGACGGAGTGCGCGATTTGTTTGTCGGAGTTTTCCGCCGGCGATGAGGTCCGGGTGGTGCCGAACTGCGGCCATGGGTTTCACGTGGCGTGTATCGATACATGGCTTGGTTCTCACTCTTCATGTCCGTCATGTCGTGCCCTGCTTCCTCCGGCGAGGTGCCAGAAGTGCGGTCAGTTGCCGGCGGTGGTTGGTCGTGAAACAGAGTTGAAATTCGTAGGCGGCGGTGATGGCGGTGCCGCTTCTAATGCGAACTGTAATAGTGGTTTCTTGCCTTGA 594 0.5758 MTRTLRILQSINNATAPPSPETPSTESDYVVILAALLCALICVVGLIAVARCAWLRRSSVPTVAGNSPTQTLANKGLKKKVLNSLPKFTYLDGDAGGNNGNKWVPTTECAICLSEFSAGDEVRVVPNCGHGFHVACIDTWLGSHSSCPSCRALLPPARCQKCGQLPAVVGRETELKFVGGGDGGAASNANCNSGFLP* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1511 197 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 193 - -
Lan6g1511 197 SMART ring_2 109 150 IPR001841 -
Lan6g1511 197 CDD RING-H2_PA-TM-RING 108 151 - -
Lan6g1511 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 157 IPR013083 -
Lan6g1511 197 Pfam Ring finger domain 108 151 IPR001841 -
Lan6g1511 197 SUPERFAMILY RING/U-box 81 157 - -
Lan6g1511 197 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 193 - -
Lan6g1511 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1511 Lan-Chr6 22173524 22174222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1511 1 162 C3H Transcription Factor Family AT1G20823 58.824 4.98e-57 177
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0077 18 578277 579163 Lan6g1511 6 22173524 22174222 LSH
Lan6g1511 6 22173524 22174222 Lan18g0077 18 578277 579163 LSH
Lan18g0077 18 578277 579163 Lan6g1511 6 22173524 22174222 PCT
Lan6g1511 6 22173524 22174222 Lan6g1511 6 22173524 22174222 PCT
Lan6g1511 6 22173524 22174222 Lan18g0077 18 578277 579163 PCT