Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1490 ATGGGTACCAAGTTCAGACACGTGTTTCATAGGTTAAGTTGTTTTGCAGCTACTTCTAGGAACAAAAACAATAACTCATCTGATATAACAACTTTTCAAAGGGATGTTGAAAATGATGAATTCAAGTTTTCTAGTACTCAATGTCTCTCTTCCTACTACAGTGTTTTTGTGGTTCGCCTAGCAATCATGGTCATGCTAGCCATCTTGATTGGACTGCTTACTATACTTACATGGCATTTTACAAAGATATATACAACAAAATCTCTTAATAGCTTAGCGTATGATCTGCGTTATGAACTTCTACAGCGTCCCATTTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATTACAACAGCTCAAGTCAAGTTGTCCGAGTATGTGATCAGACGCCACGGCAAAGTTGCAACTCAAGGAGAGCAAGTTGAGATGTATGAAGCAATGAGGGATGTAACATGGGCATTGTTTGTTAGCAGAAAAGCCCTCAACTCAATAACGGTCAAATACAGGAACGGATTTGTCCAAGCATTTCATAGAGATCTGAAGGCTAACAATACGTTTTACATTTACTCTGATCTTACTAATTACTCCATAAGTGCCACTGGAGATGAAGTTTGGAATGATCAAAACATTCTAGGTAACAAGTCCATGATTTGGTATCGGGAGCCACTTAACCCTGTAAGTGGTGAGAAGATTGGAAAAGCGATTCAAATTGCGCCAGAAGACTCAATAAATATCGCTGGCATCTCTCAAGTGTCTGATGGTGTAGCTTCGTGGCACGTTGCTGTGAGCAAGTTCACAGATTCACCACTGCTTTCGGCAGCATTGCCAGTTCGGGACGCAACGAACAAGAGTATTGTGGCAGTTGTGGGTGTGACAACTGCATTTTATAGTGTAGGACGGCTAATGAAAGAACTGGTTGAGTTGCATAGTGGTCATATGTATTTGACCTCACGAGAAGGTTACTTACTTGCAACTTCCACAAATGCGCCTTTACTAGCAAATTCGACAAAGGGGCCTAAGCTTAAGATGGCCGTCGACTGTGAAAATGATGTAATAAAAGAAGGAGCTGAGTATTTACAGAAAACCTACGGGAATAATCTCCCGCCAAGTCACGAGGTTCATGTAGTGAATGCAAGGCTAGGCCACCAGCAATATTACATTGACTCATTCATCCTAAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCAAGAAAGTATATCATGGGGCAGGTAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATTTGCATCATTGTGTATTATTGTCATTGGATGGGTATGCATTTTGATATTGACAAATGGAGTATCGAAGGAAATGAAACTAAGAGCCGAATTGATCAGTCATCTGGAAGCAAGAAGGAAAGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCTGCAGTAATCGGGCTACTTGACATTCTTATTTCGGATGACTGTCTCACAAATGAACAATGTGCAACAGTTACTCAAATACGAAAGTGCTCAACTGCGCTGCTCCGTCTTCTTAATAACATCTTGGATTTAAGCAAGGTAGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGAGAGCTTGAAGGCCTTGTAGATATGTTTTCTGTGCAATGCGTTAACCACAATGTAGAGATTGTTTTAGACCTGTCTGATGATATGCCGAAGCTAGTGCAGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCGAATTTGATCAACAACTCAATCAAGTTTACTCAATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTACAGTGATAGTTCAAATTTTCCTCTTGAGCAGAAGAAATCAGGGTGTGCGCAAAAGACAAAAGCGAAGCAACATGAGAACCAAGCGAAGAGGACATCTAAGAGAGTTAACAAAATGATACTTTGGTTTGAAGTTGATGACACGGGCTGTGGTATTGACCCAAGGAAATGGGATTCTGTGTTTGAAAGTTTTGAGCAAGCAGATCCATCAACTACTAGATTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAGCTTGGTTAAAAAGATGGGTGGAGAAATCAAGGTTGTCGAAAAGGAGGGACCAGGAACACTGATGCGATTATACCTATGTCTCGGTGCGCCTGTGGACGCTGTAGAAAAGCATTGTCAAGTAGATTTCGCTAACAATGGCTTGGTGGTACTGCTTGCACTTCATGGCAACATTGGTCGATTAATTACGTCGAAGTGGTTAGAGAAAAATGGGGTGTTCGCTATGGAGGCATCAGAATGGAATGGATTAACACAAATTCTGAAGGAACTCTTCAACGCGGGATGTTCAGTTATCAATAACGGCTTCGATGCACATTATCCAGTACATGAGAGTTTGAGATCTAAACTGATGAACATACAGGACATTAGGAACCTGACTTTTGTAATTGCTGTTGACATTGGGTTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTCACAAGTACTTCGGCCGAGCAAAGTTTGTTTGGGTGCTAAATCATGACACTTCTAATACCATAAAGATGGAGCTTCGCAGGAACGGACACATACTTACGGTCAACAAACCCCTTTACAAAACAAAAATGATTCATATTTTGGAAGCTGTCATAAAGGAGAGAAATCTCGAGGTACGAAGGAAAAATATGAGTACTCCAAAATCCACTACGCAAGAGGGTGATTCGCACAAGTCTTTCGAGATTGATTTTACTCATTGTGATGCTGCTAGCTCGGATGGTTCTGATATAACTGAACTAGGAGGTTCTGATCCTGTTAGTGCCAATGCTGATATACAAAGAGAGAAGCTAGCTAGATCTGATGCATCATCACAATACAAGATGAATAACTGCTTAGTAAGATTAACAAATGAATATTTAGAAGATAACAATTATCCTATGAAGAAAAGGTCATGTGAGAGCAGCCTCGACTCCGACAAAGTCACTGCAGATGCCACAACAAAATCATCGTCCTCTAGACAATCATCCGTGACAAAAGGCGCAGCGAATGGAAAGAAAACTCTTGAAGGTCTGAGGATACTGCTCGTAGAAGATACGCTATTAATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCAATGTTGTTGGTGTAGGTGATGGACAGCAGGCAGTGGATGCTCTATATGGCGTTCTCGGCGCCGAAGATGGTAGAAGGGAGTCTCAACTAAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTGCCGTCCTCCATATGATTTGGTCCTAATGGATTGTCAGATGCCAAAAATGGATGGGTATGAAGCAACAAAAGCAATAAGGAAATCAGAAATAGGAACAGGAATGCACATTCCAATTGTTGCTCTAACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTCTAGCTGTTGGAATGGATGCTTATTTAACAAAACCAATTGACTTCAAACTCATGGAGTCTACTATTCTTTCACTCACAACAAAAACATCAAGTAATGCTTAG 3618 0.4088 MGTKFRHVFHRLSCFAATSRNKNNNSSDITTFQRDVENDEFKFSSTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRRHGKVATQGEQVEMYEAMRDVTWALFVSRKALNSITVKYRNGFVQAFHRDLKANNTFYIYSDLTNYSISATGDEVWNDQNILGNKSMIWYREPLNPVSGEKIGKAIQIAPEDSINIAGISQVSDGVASWHVAVSKFTDSPLLSAALPVRDATNKSIVAVVGVTTAFYSVGRLMKELVELHSGHMYLTSREGYLLATSTNAPLLANSTKGPKLKMAVDCENDVIKEGAEYLQKTYGNNLPPSHEVHVVNARLGHQQYYIDSFILNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILIFASLCIIVIGWVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCVNHNVEIVLDLSDDMPKLVQGDSARVVQIFANLINNSIKFTQSGHIILRGWCENPNSYSDSSNFPLEQKKSGCAQKTKAKQHENQAKRTSKRVNKMILWFEVDDTGCGIDPRKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVKKMGGEIKVVEKEGPGTLMRLYLCLGAPVDAVEKHCQVDFANNGLVVLLALHGNIGRLITSKWLEKNGVFAMEASEWNGLTQILKELFNAGCSVINNGFDAHYPVHESLRSKLMNIQDIRNLTFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWVLNHDTSNTIKMELRRNGHILTVNKPLYKTKMIHILEAVIKERNLEVRRKNMSTPKSTTQEGDSHKSFEIDFTHCDAASSDGSDITELGGSDPVSANADIQREKLARSDASSQYKMNNCLVRLTNEYLEDNNYPMKKRSCESSLDSDKVTADATTKSSSSRQSSVTKGAANGKKTLEGLRILLVEDTLLIQRVATIMLEKMGANVVGVGDGQQAVDALYGVLGAEDGRRESQLKERNTRSSQTEILSCRPPYDLVLMDCQMPKMDGYEATKAIRKSEIGTGMHIPIVALTAHAMSCDEAKCLAVGMDAYLTKPIDFKLMESTILSLTTKTSSNA* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1490 1205 SMART HisKA_10 475 541 IPR003661 GO:0000155|GO:0007165
Lan6g1490 1205 Pfam Response regulator receiver domain 1121 1191 IPR001789 GO:0000160
Lan6g1490 1205 CDD REC_hyHK_CKI1_RcsC-like 1052 1194 - -
Lan6g1490 1205 Gene3D - 1027 1199 - -
Lan6g1490 1205 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1199 - -
Lan6g1490 1205 SMART REC_2 1050 1194 IPR001789 GO:0000160
Lan6g1490 1205 Pfam His Kinase A (phospho-acceptor) domain 476 541 IPR003661 GO:0000155|GO:0007165
Lan6g1490 1205 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 530 736 IPR036890 -
Lan6g1490 1205 CDD HisKA 476 537 IPR003661 GO:0000155|GO:0007165
Lan6g1490 1205 ProSiteProfiles Response regulatory domain profile. 1051 1198 IPR001789 GO:0000160
Lan6g1490 1205 SUPERFAMILY CheY-like 1048 1198 IPR011006 -
Lan6g1490 1205 Gene3D - 444 539 - -
Lan6g1490 1205 SMART HKATPase_4 588 740 IPR003594 -
Lan6g1490 1205 PRINTS Bacterial sensor protein C-terminal signature 665 679 IPR004358 GO:0016310|GO:0016772
Lan6g1490 1205 PRINTS Bacterial sensor protein C-terminal signature 683 693 IPR004358 GO:0016310|GO:0016772
Lan6g1490 1205 PRINTS Bacterial sensor protein C-terminal signature 700 718 IPR004358 GO:0016310|GO:0016772
Lan6g1490 1205 ProSiteProfiles Histidine kinase domain profile. 482 740 IPR005467 -
Lan6g1490 1205 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 588 736 IPR003594 -
Lan6g1490 1205 MobiDBLite consensus disorder prediction 1009 1041 - -
Lan6g1490 1205 Gene3D - 540 740 IPR036890 -
Lan6g1490 1205 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1199 - -
Lan6g1490 1205 MobiDBLite consensus disorder prediction 1017 1041 - -
Lan6g1490 1205 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 462 542 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1490 Lan-Chr6 21780891 21788694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1490 4 1202 Histidine Kinase Gene Family AT2G17820 63.388 0.0 1532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan6g1490 HATPase_c 1.6e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1490 - - gmx:100801970 1875.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1490 6 21780891 21788694 Lan6g1490 6 21780891 21788694 ECH
Lan6g0207 6 1567698 1574047 Lan6g1490 6 21780891 21788694 PCT
Lan6g1490 6 21780891 21788694 Lan6g0207 6 1567698 1574047 PCT