Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1470 ATGTTGTTGAAGTTGTCATTGCCAATGCCATCACCACTTCTCTCTTTCTCTCAAAACTTCATTCCTTTTTCTCATCCCTTCAAACCCCTTCTCACTTTTAACAACTCAGTCAAATGCCGCCACTCTCAACCCACATCACAGGCTGCAACCCCAACTCCTCATTCAGTTGAAGCCTTGCCACCCAGGGTTTATGTTAATCACTCCATTTACAAAGGGAAAGCTGCACTTACACTTACTCCTAGACCACCAGAATTTGCCCCACTCGAATCAGGAGCTTTCAAAGTATCTAAGGAAGGTCATGTGCTGCTTCAGTTTGCACCTGCTGTTGGTCTGCGCCAATATGACTGGGAAAGAAAGCAGATATTCTCGTTATCAGTGGGAGAAATGGGAACTATAATTAGCCTTGGTGCAAGGGATTCTTGTGAATTTTTTCATGATCCTTCCAAAGGCAAAAGTGATGAAGGTAAAGTCAGAAAAGTTTTGAAGGTGGAGCCTCTTCCAGATGGTTCTGGCCACTCCTTTAAGCTTAGTGTTCAAAACAAGCTTGTGAATGTGGATGAAAACATCTATATCCCTGTTACAAAAGCAGAGATAGCTGTTTTGAGCTCAATTTTCAATTTTATCATACCATATCTAATAGGTTGGAATACCTTTACAAACTCCATAAAGCCAGATGAATCCATTGGAGTGAATAGTAATAGCAACCCAAGATATGGAGGAGACTATGAATGGAACAGATAG 741 0.4143 MLLKLSLPMPSPLLSFSQNFIPFSHPFKPLLTFNNSVKCRHSQPTSQAATPTPHSVEALPPRVYVNHSIYKGKAALTLTPRPPEFAPLESGAFKVSKEGHVLLQFAPAVGLRQYDWERKQIFSLSVGEMGTIISLGARDSCEFFHDPSKGKSDEGKVRKVLKVEPLPDGSGHSFKLSVQNKLVNVDENIYIPVTKAEIAVLSSIFNFIIPYLIGWNTFTNSIKPDESIGVNSNSNPRYGGDYEWNR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1470 246 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 42 246 - -
Lan6g1470 246 Gene3D Transcriptional Coactivator Pc4; Chain A 55 232 IPR009044 GO:0003677|GO:0006355
Lan6g1470 246 Pfam Whirly transcription factor 69 203 IPR013742 GO:0003697|GO:0006355|GO:0006952
Lan6g1470 246 SUPERFAMILY ssDNA-binding transcriptional regulator domain 61 246 IPR009044 GO:0003677|GO:0006355
Lan6g1470 246 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 246 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1470 Lan-Chr6 21544324 21552854 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1470 36 246 Whirly Transcription Factor Family AT1G14410 68.372 4.03e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Lan6g1470 Whirly 2e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1470 - - gmx:100789252 341.658