Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1469 ATGAATTCTTCTTACCACTATCAACTATTCAAGTTCAGCACATCATTAACAACAACAACAAAAACAACATGCACCAAGTTGTTGTTACCAAACATGCTTCATCGTCTCTTCTTTGTATTGCTTCATTCCAATCCCAACAGAAACAGAAACAGAAACAACAACATGAACATTATCCTTTGTTCTTCATCACTCACCAATGATCATTCCTTTCATTCCATCCCTAAACAAACCCACCAGTTTGATTACAACTCTCCAGAGGAACTCTTCGGGCTGGAAGTGGAACACAAGCCAAGCAAAGGTAACTCTCGTACACCAGAACCGAGGTCGTGGTTTGGTCCGAATGGACAGTATATCAGAGAGCTACCTTGTCCAAGTTGTCGCGGAAGAGGTTATACTCCTTGTACAGAGTGTGGAATAGAAAGATCAAGGTCTGACTGTCCTAAATGTAATGGAAAGGGTATAGTGACTTGCCACAAGTGCTCAGGAGATTGTGTTATATGGGAAGAATCAATTGATGAACAACCTTGGGAGAGAGCTCGTTCTGTTTCACCACTTAAAGTGAAGGAGGACGATGAAGTCGACAGTTTAGACATAAAGTTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAATCACCAACTCCCGAAGTCGGATTAAAGATTAGTCGTTCATTAAAAAGTCTCAATGCAAAAACTGGTCTATTTAGTAACCACATGAAGATTATCCACCAAGATCCAATGCTTCAGGCACAGAGAGTTGCTGCCATTAAGAAAGCCAAGGGAACTGTTGCAGCAAGAAAGCATAGTTCCAAAACTATGAAAGCTTTCTTCAGTGATCCAATAAACCGTCTGAAAAGGAGCATCGCTATGAAGGGAGTGAAATTCTACTGCCAACATTGTGGACGCGAAGGGCATAGGAGACATTACTGTCCAGAACTCAAAGATGGTTTGATCCGTTGGCAATACGCATGTCGGCTATGTGGGGAAAAAGGCCACAACAGAAGAACATGTATAAAGTCAAGTATAAGCCATACCGACGGGAGAGTTAAAAAACAGTATCGGTGTAAAATATGTCATCGTTACGGCCATAACTGTAGGGCGTGCCCTCAAGTTGTTTCTAATAAAAGAAGGGACCTGGCTTCTCATAAATCATACAAGTGTCGGTTGTGCCACAAAGAAGGACACAATAGTAGGACATGTCCTAGTAGGATAATTGTTGATGAGCAATCAGAAGGGGAACAATCAGTGTCCTAG 1254 0.4163 MNSSYHYQLFKFSTSLTTTTKTTCTKLLLPNMLHRLFFVLLHSNPNRNRNRNNNMNIILCSSSLTNDHSFHSIPKQTHQFDYNSPEELFGLEVEHKPSKGNSRTPEPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGIVTCHKCSGDCVIWEESIDEQPWERARSVSPLKVKEDDEVDSLDIKLDVKKKSKRVYQSPTPEVGLKISRSLKSLNAKTGLFSNHMKIIHQDPMLQAQRVAAIKKAKGTVAARKHSSKTMKAFFSDPINRLKRSIAMKGVKFYCQHCGREGHRRHYCPELKDGLIRWQYACRLCGEKGHNRRTCIKSSISHTDGRVKKQYRCKICHRYGHNCRACPQVVSNKRRDLASHKSYKCRLCHKEGHNSRTCPSRIIVDEQSEGEQSVS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1469 417 SUPERFAMILY Retrovirus zinc finger-like domains 380 403 IPR036875 GO:0003676|GO:0008270
Lan6g1469 417 ProSiteProfiles Zinc finger CCHC-type profile. 297 312 IPR001878 GO:0003676|GO:0008270
Lan6g1469 417 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 58 404 - -
Lan6g1469 417 Gene3D - 348 403 - -
Lan6g1469 417 SUPERFAMILY Retrovirus zinc finger-like domains 294 340 IPR036875 GO:0003676|GO:0008270
Lan6g1469 417 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 58 404 - -
Lan6g1469 417 Gene3D - 290 341 - -
Lan6g1469 417 SMART c2hcfinal6 296 312 IPR001878 GO:0003676|GO:0008270
Lan6g1469 417 SMART c2hcfinal6 354 370 IPR001878 GO:0003676|GO:0008270
Lan6g1469 417 SMART c2hcfinal6 323 339 IPR001878 GO:0003676|GO:0008270
Lan6g1469 417 SMART c2hcfinal6 386 402 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1469 66 417 C2H2 Transcription Factor Family AT5G20220 62.222 3.60e-155 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1469 - - gmx:100800156 570.466