Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1457 ATGATCACTGACATGAAATCTACAAGTGCCTTGGCTGCCAAGACAGCAAGAGCTTGTGATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGCAACTGATGATGCTTTCTTATGCCATAGTTGTGACTCTTTGATTCACTCAGCAAATCAATTAGCCAATAGGCATGAAAGAGCTAAGCTTCCAACTGCATCAAATAAGGTAACAACAACATCAACAGCACAAGCATGGCACAGTGGCTTCAAACGCAAGGCAAGAACCCCGCGAAACAACAAGCACTTGGCACTTCAACAAAGACTCCAACACAAAGTGGTTTTCAACAACACTAGTACTAATGTTCTTCCTGTTGTGCCTGAACTTGGAGGAGGAGAAGAACATGTGTTTAATGATGAAGAGAGTGAGGAACAGATGCTATGCTGTGTGCCTGTGTTTGAACCGTTTGATGCTGCTGAGTTTTGCAATATATACAACAATGAAGTGAGTATGAAAAATGATGCTGCTGGTGAAGAAGCATGTGACTTGAATAGCTTTTCTGAGTTTCTGGCTTCAGATATGGATCTTGCTGAGTTTTCTGCTGATGTTGAAACCCTTCTTGGAACATCAGAAGTGCTTGAATATAAAGAAGAAGATGAAATAGACGGAAGGAAAAGCAAAGATGCAAATGCAATAATTAGGGTTAAGGATGAAGAACTTGATGAAGATACAACATGTCATCTTGACTCAGTTTTTAACATGACAAATGAGGCAATAGATTGGAACATTGATTCAGTGCTATTAACAGCACTATCAGCTGCTGCACCAGAAGAGGAGGAAAAAGTGGTGGTGTCTGTGGTGGCACCGGAGAGTAAGGTGGAAACAAAGAGGGACATAATTTTGAGACTAAAGTTAAATTATGAGGAAGTTATTACTGCTTGGGATAGTCAAGGTTCTCCATGGATAACAGGAAACCCACCTAGGTTCAATTCTGATGACTGCTTGCAAGACTTTTTGGGTTCATCAAGTGGTGGAGATGTTCAATGCTCTTCTTATGAGGAAATAAGAAGGTTAAGGGGACACTTTGTAGATGGGGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAGAGAAGAACTCGTCTGTTTGCAAAGAAGATTAGATATGAAGTAAGAAAGTTGAATGCAGAGAAGAGACCAAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCAATAATACTTTTCAGCCTTACCATTGA 1233 0.4063 MITDMKSTSALAAKTARACDSCLRRRARWFCATDDAFLCHSCDSLIHSANQLANRHERAKLPTASNKVTTTSTAQAWHSGFKRKARTPRNNKHLALQQRLQHKVVFNNTSTNVLPVVPELGGGEEHVFNDEESEEQMLCCVPVFEPFDAAEFCNIYNNEVSMKNDAAGEEACDLNSFSEFLASDMDLAEFSADVETLLGTSEVLEYKEEDEIDGRKSKDANAIIRVKDEELDEDTTCHLDSVFNMTNEAIDWNIDSVLLTALSAAAPEEEEKVVVSVVAPESKVETKRDIILRLKLNYEEVITAWDSQGSPWITGNPPRFNSDDCLQDFLGSSSGGDVQCSSYEEIRRLRGHFVDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCNNTFQPYH* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1457 410 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Lan6g1457 410 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lan6g1457 410 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Lan6g1457 410 CDD Bbox1_BBX-like 18 58 - -
Lan6g1457 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 402 - -
Lan6g1457 410 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lan6g1457 410 Pfam CCT motif 358 400 IPR010402 GO:0005515
Lan6g1457 410 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1457 Lan-Chr6 20902943 20926173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1457 5 400 C2C2-CO-like Transcription Factor Family AT1G25440 41.315 1.58e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan6g1457 zf-B_box 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1457 - - adu:107478728 449.899