Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1443 ATGTCAATGACCCGAAAGGAAATGGATCGGGTAAAGGGTCCATGGAGCCCAGAAGAAGATGAGTGTTTACAAAAACTGGTTGAAAAACACGGAGCAAGAAACTGGTCACTAATAAGTAAATCAATTCCGGGCCGATCTGGAAAATCATGCAGGCTCAGGTGGTGTAACCAGCTCTCACCTCAAGTAGAGCATCGGGCTTTCACAAACGAAGAGGACGACACTATAATAAAAGCCCATGCCCGGTTCGGAAATAAATGGGCCACAATAGCCCGTCTTCTTTCCGGTCGAACCGATAACGCTATAAAAAACCATTGGAACTCAACGCTTAAACGTAAGTGCGGTTTAATGAGTTTTCACGAAACCGAACCTTTTAACTGTTTTGCGGTTGAGCCTCCGCGTAAACGTTCTTTGAACCCTGGCGCGGTGGTTCCGGTTTGTACTGGGGTCGCTTCGCCGGGTAGCCCGTGTGGATCGGTATCTGATATGAGCGAGTGTAGTGTTCCTTACGCTGTGATTCGGAACTTGGTGGAAACTGTAACGACGTCGTGTTGTGGTGATGATGGGCCTGCGACTTCGTTGTCGCTGTCGCTGTCTCTTCCCGGCGTGGAACAGTGTTCATTTGACGCGGTGACGGAGAATGTTGTGGCGCGAAAAGAACAGCGTCAAGAGAATGGTGTTAGTTTTGGAGGGTTTGGTTTTAGTAATGAGTTAATGGCAGTGATGCAAGAGATGGTAAAGAAGGAAGTGAGGAATTACATGGCTGGAATGTGTTTGGAAGATAAGAGTGAGGGGTTTAGGAATGTGTCGGTGAATCGAATTGGGATTAACAGGGTTGATTCATGA 843 0.4745 MSMTRKEMDRVKGPWSPEEDECLQKLVEKHGARNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTNEEDDTIIKAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCGLMSFHETEPFNCFAVEPPRKRSLNPGAVVPVCTGVASPGSPCGSVSDMSECSVPYAVIRNLVETVTTSCCGDDGPATSLSLSLSLPGVEQCSFDAVTENVVARKEQRQENGVSFGGFGFSNELMAVMQEMVKKEVRNYMAGMCLEDKSEGFRNVSVNRIGINRVDS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1443 280 Gene3D - 66 112 - -
Lan6g1443 280 PANTHER TRANSCRIPTION FACTOR MYB73 3 252 - -
Lan6g1443 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Lan6g1443 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Lan6g1443 280 Gene3D - 11 63 - -
Lan6g1443 280 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Lan6g1443 280 CDD SANT 14 56 IPR001005 -
Lan6g1443 280 SMART sant 11 60 IPR001005 -
Lan6g1443 280 SMART sant 63 111 IPR001005 -
Lan6g1443 280 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Lan6g1443 280 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Lan6g1443 280 PANTHER MYB PROTEIN-RELATED 3 252 - -
Lan6g1443 280 CDD SANT 66 109 IPR001005 -
Lan6g1443 280 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Lan6g1443 280 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1443 Lan-Chr6 19903101 19904220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1443 4 279 MYB Transcription Factor Family AT4G37260 48.485 1.91e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g1443 Myb_DNA-binding 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1443 K09422 - mnt:21392626 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0325 17 2383075 2384686 Lan6g1443 6 19903101 19904220 LSH
Lan6g1443 6 19903101 19904220 Lan17g0325 17 2383075 2384686 PCT
Lan6g1443 6 19903101 19904220 Lan6g1443 6 19903101 19904220 PCT