Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1419 ATGGCTGCAAATAATAATCAGGAACAACAGAACCAACTCGTTGGTCACAAAGATCTTGCTCATAAGAGTCTCCTTCAGAGTGATGCACTCTACCAGTATATATTAGAAACTAGTGTGTTTCCAAGAGAGCATGAAAGCTTGAAAGAACTCCGCCAGATGACAGAAAAGCACCCTCGGAACCTTATGGCCACACCAGCTGATGAAGGACAATTTCTAAGGATGTTGCTTAAGCTCATCAATGCTAAGAACACAATAGAAATTGGTGTCTACACTGGTTACTCTCTACTTTCCACTGCTCTAGCTCTTCCAAATGATGGAAAGATTTTGGCTTTGGACGTGAACCGAGAATATTATGATCTGGGTTTACCTATAATTCAAAAAGCTGGAGTGGAACACAAGATTGACTTTAGAGAAGGACCTGCACTTCCTCTTCTAGATGAATTGGTTAAAGATGAAAAGAATAAGGGGTCATATGATTTTGTGTTTGTGGATGCTGACAAGGACAATTACTTAAACTACCACAAAAGAGTGATCGAACTAGTGAAGGTTGGGGGATTAATCGGCTACGACAACACCCTATGGGGTGGATCTGTGGTGGCCCCACCTGATGCACCTTTAAAGGATTATATAATACATTTTCGCGGTTTTATTTTGGAACTCAACAAGTATCTTGCTAATGACTCTCGAATAGAAATTTGCCAGCTCCCCGTTGGTGATGGCATTACCCTGTGCCGCCGCATCATCTGA 747 0.4177 MAANNNQEQQNQLVGHKDLAHKSLLQSDALYQYILETSVFPREHESLKELRQMTEKHPRNLMATPADEGQFLRMLLKLINAKNTIEIGVYTGYSLLSTALALPNDGKILALDVNREYYDLGLPIIQKAGVEHKIDFREGPALPLLDELVKDEKNKGSYDFVFVDADKDNYLNYHKRVIELVKVGGLIGYDNTLWGGSVVAPPDAPLKDYIIHFRGFILELNKYLANDSRIEICQLPVGDGITLCRRII* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1419 248 Pfam O-methyltransferase 37 247 IPR002935 GO:0008171
Lan6g1419 248 CDD AdoMet_MTases 85 187 - -
Lan6g1419 248 PANTHER CAFFEOYL-COA 3-O-METHYLTRANSFERASE 1 248 - -
Lan6g1419 248 PANTHER O-METHYLTRANSFERASE-RELATED 1 248 - -
Lan6g1419 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Lan6g1419 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
Lan6g1419 248 Gene3D Vaccinia Virus protein VP39 12 248 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1419 Lan-Chr6 19016617 19019618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1419 4 247 Monolignol Biosynthesis Gene Families AT4G34050 75.000 1.37e-141 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1419 K00588 - gmx:100795858 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1285 17 21095077 21097327 Lan6g1419 6 19016617 19019618 LSH
Lan6g1419 6 19016617 19019618 Lan17g1285 17 21095077 21097327 LSH
Lan17g1285 17 21095077 21097327 Lan6g1419 6 19016617 19019618 PCT
Lan6g1419 6 19016617 19019618 Lan6g1419 6 19016617 19019618 PCT
Lan6g1419 6 19016617 19019618 Lan17g1285 17 21095077 21097327 PCT