Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1411 ATGGAGCAAAGAAAGCTTGTGGTTTTGGGTATCCCATGGGACATCGACACCGAGGGCTTGAAAGAATATATGAGCAAATTTGGAGATCTAGAAGATTGTATTGTTATGAGGGAACGGTCAACTGGCCGGTCTCGTGGTTTTGGATACGTTACATTTACATCGGTAGATGACGCGAAGAATGTATTATCTGGTGAACACATTCTTGGTGACCGTACGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGACACCATCAGCCAAAAAAGTTACTAGAATCTTTGTGGCCAGAATTCCACCATCAGTAACAGAAGAAACCTTTAGAAGTCATTTTGAGAAATATGGTGAGATAACAGATTTATACATGCCAAAGGATCAAGGATCAAAAGCACATCGTGGAATTGGTTTTATCACTTTTGCAAATGCAGATTCTGTAGAGAATTTGATGGTAGAAACCCATGAACTAGGCGGTTCCACTGTGGTGGTTGACCGAGCAACACCTAAGGAAGATGACTTTAAGCCAATTGGTAGAATGCCTCACTCAAACATACGTTCACATTCACACTCACAGTCACAGGGAGGATATGGTGCATACGATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCGTCCTGGCCCAATTTATGGAAGGAGTGAACCTGTTCGTGGAATGGGCAACAAGATTTTTGTTGGCCGCCTTCCCCAAGAGGCAACCAGTGATGATCTTCGTCATTATTTTGGAAGATTTGGCCGTATATTAGATGCATATATTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGTTTTGTTACTTTTGCTGAAGACGGTGTGGCGGATCGTGTCTCTCGAAGGTCTCACGAAATCTGTGGACATCAGGTGGCAATTGATTCAGCTACACCTCTTGATGATGCTGGACCTGGGGCTGGACCTAGACCTCCTGGTGGGAATTTTATGTTGAACAGCATGGATACTTATGGGGGATTCGGTGGTCCTATGCGAACTTATGGGAGGATGTATGGCAGCCTGGACTTTGATGATTGGGGTTATGGAGTTTCCAGTTCCAGACCATCAAGATCAGATTGGAGGTATAGACCATACTAG 1140 0.4439 MEQRKLVVLGIPWDIDTEGLKEYMSKFGDLEDCIVMRERSTGRSRGFGYVTFTSVDDAKNVLSGEHILGDRTLEVKVATPKEEMRTPSAKKVTRIFVARIPPSVTEETFRSHFEKYGEITDLYMPKDQGSKAHRGIGFITFANADSVENLMVETHELGGSTVVVDRATPKEDDFKPIGRMPHSNIRSHSHSQSQGGYGAYDAYISATTRYAALGAPTLYDRPGPIYGRSEPVRGMGNKIFVGRLPQEATSDDLRHYFGRFGRILDAYIPRDPKRSGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDDAGPGAGPRPPGGNFMLNSMDTYGGFGGPMRTYGRMYGSLDFDDWGYGVSSSRPSRSDWRYRPY* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1411 379 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Lan6g1411 379 SUPERFAMILY RNA-binding domain, RBD 237 340 IPR035979 GO:0003676
Lan6g1411 379 Gene3D - 235 317 IPR012677 -
Lan6g1411 379 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 3 379 - -
Lan6g1411 379 SMART rrm1_1 238 309 IPR000504 GO:0003723
Lan6g1411 379 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lan6g1411 379 SMART rrm1_1 94 165 IPR000504 GO:0003723
Lan6g1411 379 MobiDBLite consensus disorder prediction 173 193 - -
Lan6g1411 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 313 IPR000504 GO:0003723
Lan6g1411 379 SUPERFAMILY RNA-binding domain, RBD 90 197 IPR035979 GO:0003676
Lan6g1411 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 151 IPR000504 GO:0003723
Lan6g1411 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Lan6g1411 379 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 293 IPR000504 GO:0003723
Lan6g1411 379 PANTHER OS01G0945800 PROTEIN 3 379 - -
Lan6g1411 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Lan6g1411 379 Gene3D - 86 205 IPR012677 -
Lan6g1411 379 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Lan6g1411 379 Gene3D - 1 85 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1411 Lan-Chr6 18611947 18619226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1411 6 286 Eukaryotic Initiation Factors Gene Family AT3G16380 22.997 1.65e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1411 K14411 - gmx:100795240 629.017