Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1409 ATGTCGCAGCCTGCACCGTTCTTGACGAAGACATATCAGATGGTGAATGACTGTGAAACTGATGAATTGATATCGTGGAGTGAAAGTGGGAACACTTTTGTTGTGTGGAAACATGCTGATTTTGCTAGTGACATACTTCCTAGGTATTTCAAACACAACAATTTTTCCAGCTTTGTTCGACAGCTCAATACCTATGGATTCCGAAAGATAGTTCCTGACAAATGGGAATTCAGCAACGAACATTTCAAGAGAGGACACAAGGAGCTACTCATCGAAATCAAACGGCGTTTGACAGTTTCAACGACCCGAAAATCCAGCGACGGTAGCGGCGGCGGCGACAATAATCCACCGTCAAATTCCGGTGCCGATGACATGGGGTCCACCTCAACAGGGTCTATGGAGGATGCAACAACAAGAGATTTATCATGTGAGAATGAGAAATTGAAGAAGGACAATGAGAAATTGAGTTGTGAGTTAGCACGTGCAAAAAAGCAATGTGATGAGCTGGTGGCATTTATGAGGAACTCTTTCGATGTGGGACTTGATCAGATAAACCGTATCATTCAGCAGGGTAGGTGTGGATCCAGCCTCAATACGGTGCGTTTTGATGATGTTGATAATGACGAAAATGGGGTAGGTGAAGGTGAAAGTGGTAGTTGTGTAAGTTTGAAATTGTTTGGGGTTTGGTTGAAAGAAGAAGAAGTGAAAGAGAAAATGAAGATTGGTGCCAACAATCATAACAATCGCTACAAGAGAGGGCATGAAGACCAAATGAGCTTCGGTGGGGCCAATAAAGAGTTGAAGACCCTTGTCTAG 816 0.435 MSQPAPFLTKTYQMVNDCETDELISWSESGNTFVVWKHADFASDILPRYFKHNNFSSFVRQLNTYGFRKIVPDKWEFSNEHFKRGHKELLIEIKRRLTVSTTRKSSDGSGGGDNNPPSNSGADDMGSTSTGSMEDATTRDLSCENEKLKKDNEKLSCELARAKKQCDELVAFMRNSFDVGLDQINRIIQQGRCGSSLNTVRFDDVDNDENGVGEGESGSCVSLKLFGVWLKEEEVKEKMKIGANNHNNRYKRGHEDQMSFGGANKELKTLV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1409 271 Pfam HSF-type DNA-binding 7 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1409 271 Gene3D - 132 177 - -
Lan6g1409 271 SUPERFAMILY "Winged helix" DNA-binding domain 3 96 IPR036390 -
Lan6g1409 271 Gene3D - 1 98 IPR036388 -
Lan6g1409 271 MobiDBLite consensus disorder prediction 101 144 - -
Lan6g1409 271 Coils Coil 138 165 - -
Lan6g1409 271 MobiDBLite consensus disorder prediction 102 138 - -
Lan6g1409 271 ProSitePatterns HSF-type DNA-binding domain signature. 46 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1409 271 PRINTS Heat shock factor (HSF) domain signature 7 30 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1409 271 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1409 271 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan6g1409 271 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 250 - -
Lan6g1409 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 250 IPR027725 -
Lan6g1409 271 SMART hsfneu3 3 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1409 Lan-Chr6 18495718 18502364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1409 2 236 HSF AT4G36990 50.996 5.20e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan6g1409 HSF_DNA-bind 6.1e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1409 K09419 - gmx:100791543 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1409 6 18495718 18502364 Lan6g1409 6 18495718 18502364 PCT