Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1371 ATGAATGGAAATTCGAAGAAGAAGGTTGGAAAGAATCAGGGATTCCTGGATTTTAACGATGACCCTCTCATGCACAATCAAAACGCCGCCGTTCAGGCTCGTGCTAAAGTCCAAAATCGTGCTAACGTCCTTCAACTTAAGCTGATTGGACAGAATCACACAACTGGTCTCACATCGAGTCTCTTGAGGCTCTTTGAGCCTAGGCCTCCCTTGGAGTATAAACCTCCTCCGGAGAAAAGAAAATGTCCACCATTAACAGGGATGGCACAATTTGTCAGCAAGTTCGCCGAGCCTGGTGATGATGAATATTCTCCACCTGTACCAGTAGCTGAAACTCCTGCAGAAAAAAAAGCGAGAATACACAAACTTCTTGTAGAGAAGGGAGCTGCAAAGGCTGCAGAGGAGCTTGAAAAATATGATCCACACAAGGACCCAAATATATCAGGAGATCCATACAAGACACTGTTTGTAGCTAAACTGAGTTATGAGTCCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTGCAATCAAACGGGTACGGTTGGTTACTGATAGCGTGACGAATAAGCCCAAGGGTTATGCATTCATTGAATACCTACACACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGAGGGCAGAAGAGTGCTTGTTTGTGTTGAACATGGGAGGACTGTTCCAAATTGGCGACCTCGCCGTCTAGGTGGTGGCCTTGGCACCACTAGAGTGGGAGGTGAAGAAGTTAATCAGTGGCATTTTGGGAGAGAGCAACAACAATCAGGACCTTCTCATTCTGAAAAACCTAGAATGCGAGAGGACCGACATGGTGATCGGGACGGAGAAAAATCACGTGAAAGAGGTAAAGATAGAGATCAAGAACAGGAGCGGTCACTTGAACGCTCTAGTGACAGGGCCAAGGATCGTGATTATAGAGAGGACAAGCACCATAGAGACCGAGATAGGAACAGGGACAGAGATAGGGAAAGAGAGAGAGATCATGGTCATGATCGACATAGAGCACGTGATCGGGATCGTGGTCGAGATTGCAATCATGATCGGGATCGAGTGAGGGACCGGGATCGGGAACATGATCGCCATCATGAAAGAGATAGAGATTATGAAGTTGAAGAAAATGACAGGGGACACTTTGATAGGAAGACTGATTATAATCATGTTGAATCTAATCATGAGAAAGACCGTCATGCTGATAGACATAATGACTATGAACTTGAGGATGATCTTGGTTACCAACCTGTGCATCGACATAGGCATGCAGATTCTGACCATGATGATTAG 1320 0.4515 MNGNSKKKVGKNQGFLDFNDDPLMHNQNAAVQARAKVQNRANVLQLKLIGQNHTTGLTSSLLRLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDDEYSPPVPVAETPAEKKARIHKLLVEKGAAKAAEELEKYDPHKDPNISGDPYKTLFVAKLSYESTESRIKREFESYGAIKRVRLVTDSVTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVCVEHGRTVPNWRPRRLGGGLGTTRVGGEEVNQWHFGREQQQSGPSHSEKPRMREDRHGDRDGEKSRERGKDRDQEQERSLERSSDRAKDRDYREDKHHRDRDRNRDRDRERERDHGHDRHRARDRDRGRDCNHDRDRVRDRDREHDRHHERDRDYEVEENDRGHFDRKTDYNHVESNHEKDRHADRHNDYELEDDLGYQPVHRHRHADSDHDD* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1371 439 MobiDBLite consensus disorder prediction 273 439 - -
Lan6g1371 439 SMART rrm1_1 154 227 IPR000504 GO:0003723
Lan6g1371 439 Gene3D - 140 266 IPR012677 -
Lan6g1371 439 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 22 374 - -
Lan6g1371 439 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 224 IPR000504 GO:0003723
Lan6g1371 439 CDD RRM_snRNP70 152 242 IPR034143 GO:0030619
Lan6g1371 439 MobiDBLite consensus disorder prediction 259 439 - -
Lan6g1371 439 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Lan6g1371 439 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 56 144 IPR022023 -
Lan6g1371 439 SUPERFAMILY RNA-binding domain, RBD 143 253 IPR035979 GO:0003676
Lan6g1371 439 PANTHER - 22 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1371 Lan-Chr6 15942523 15948339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1371 124 227 C2H2 Transcription Factor Family AT2G19380 27.885 1.53e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1269 17 20970517 20976403 Lan6g1371 6 15942523 15948339 LSH