Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1334 ATGGGTGGTGCAATTTATCAACATAGTAGCTTTAGTAGATTCTTCTTGATTATATTTGCATGGATGTTCACAACCATAGGAAAGCCAGCAATAGCAGTAGGCATATTTCAACCCAGTCAATGGACTCTTGCACATGCAACATTTTATGGTGATGAGACTGCTTCTGCCACAATGGGAGGAGCATGTGGGTATGGAAATTTATTTGTGAACGGTTACGGGACTGATACAGCAGCATTGAGCTCCACACTATTCAACAATGGATATGCATGTGGAACATGTTATCAAATGCAATGTTACCAATCAAAAGCATGCTATGCAAATGTGAGTTACATCACAATCACTGCCACCAATCTTTGCCCTCCTAATTGGTCGGAAGCCTCCGATGACGGCGGGTGGTGCAACCCACCACGAGCACATTTTGACATGTCTAAGCCTGCCTTCATGAAATTTGCACAGTGGAATGCTGGCATTGTTCCTGTTATGTATCGCAGAGTACCATGTGCAAGGAGTGGAGGGCTTAGATTCTCTTTCCAAGGAAATGGGTACTGGTTATTGGTGTATGTGATGAATGTAGGAGGTGGAGGAGATATTTCTAGCATTAGTGTGAAAGGAAGCAAAACAAGATGGATTAGTATGAGCCATAATTGGGGTGCATCATATCAAGCATTTGCATCTCTTGGTGGCCAAGCTCTTTCTTTCAGGATAACTTCATACACAACCAAACAAACTATTTTTGCATGGAATGCTGCTCCTTCTAATTGGGCTGCAGGACTAACTTATTCTACAAGATTCAACTTCAGTTAA 804 0.4216 MGGAIYQHSSFSRFFLIIFAWMFTTIGKPAIAVGIFQPSQWTLAHATFYGDETASATMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQMQCYQSKACYANVSYITITATNLCPPNWSEASDDGGWCNPPRAHFDMSKPAFMKFAQWNAGIVPVMYRRVPCARSGGLRFSFQGNGYWLLVYVMNVGGGGDISSISVKGSKTRWISMSHNWGASYQAFASLGGQALSFRITSYTTKQTIFAWNAAPSNWAAGLTYSTRFNFS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1334 267 Gene3D - 173 267 IPR036749 -
Lan6g1334 267 Pfam Expansin C-terminal domain 174 251 IPR007117 -
Lan6g1334 267 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Lan6g1334 267 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Lan6g1334 267 PRINTS Expansin/Lol pI family signature 80 98 IPR007118 GO:0005576
Lan6g1334 267 PRINTS Expansin/Lol pI family signature 155 171 IPR007118 GO:0005576
Lan6g1334 267 PRINTS Expansin/Lol pI family signature 209 223 IPR007118 GO:0005576
Lan6g1334 267 PRINTS Expansin/Lol pI family signature 248 262 IPR007118 GO:0005576
Lan6g1334 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 262 IPR007117 -
Lan6g1334 267 Gene3D - 28 168 IPR036908 -
Lan6g1334 267 PANTHER EXPANSIN 4 266 - -
Lan6g1334 267 SUPERFAMILY PHL pollen allergen 169 261 IPR036749 -
Lan6g1334 267 PRINTS Expansin signature 71 85 IPR002963 GO:0009664
Lan6g1334 267 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Lan6g1334 267 PRINTS Expansin signature 130 147 IPR002963 GO:0009664
Lan6g1334 267 PRINTS Expansin signature 147 160 IPR002963 GO:0009664
Lan6g1334 267 PRINTS Expansin signature 171 183 IPR002963 GO:0009664
Lan6g1334 267 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Lan6g1334 267 PRINTS Expansin signature 218 239 IPR002963 GO:0009664
Lan6g1334 267 SMART dpbb_1 76 162 IPR007112 -
Lan6g1334 267 PANTHER EXPANSIN-A15 4 266 IPR002963 GO:0009664
Lan6g1334 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 172 IPR007112 -
Lan6g1334 267 SUPERFAMILY Barwin-like endoglucanases 40 190 IPR036908 -
Lan6g1334 267 Pfam Lytic transglycolase 76 162 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1334 Lan-Chr6 14795193 14797992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1334 3 266 Expansin Gene Family AT1G12560 64.773 3.09e-126 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1334 - - lang:109349912 445.662