Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1310 ATGGATCGAGGCCATTCTCTTCCTCCTCCTTTCCACACAACAAGAAATTTCCCACAGCACCAATTCCACCCGTTCCCTCAAAACAAAGAAGATGAACAAAGTGGCAGCAGCAGCAATGTCCTAAAACGAGACCGAGAAGAAAATAATAACAACAACAACAACAATAGCGATGAAGGGAAGGAAGCCACCGGTGGTTCTGGTGAAGCTGAACTATCAAGAAGAGCAAGAGGAAGACCTTCTGGATCCAAGAACAAACCCAAACCACCTATTATCATCACACGCGATAGCGCAAATGCTCTAAGGACACATGTTATGGAGGTAGCAGATGGGTGTAACATCATTGAAAGTGTGTCTAACTTTGCAAGAATTCGTCAAAGAGGTGTATGTATTATGAGTGGCACTGGAAGTGTCACCAATGTAACTCTAAGGCAACCAGGTTCTTCCGGTGGTGTTGTTACTCTTCATGGAAGTTTCGAGATCCTATCAGTTTCTGGATCCTTTTTGCCACCACCGGCTCCGCCGAGTGCGTCTTCGGGTTTGACAATATATTTGGCTGGAGGGCAAGGTCAAGTTGTTGGTGGAAGTGTTGTTGGAACACTTCTTGCTTCTGGGTCAGTGGTGATTATGGCTGCTTCGTTTAGCAACGCCGCTTATGAGAGACTTCCTTTGGAAGATGAGGATAGTTCATTACCACTGCAAGGAGGAGGAGGTTCAATTATTGGTTCACCTGGAGCTAGTCAAGTTGGTCAGTACCATCATCAGCAACAACAACAGTTACAGTCACAGGGTTTTGGAGATGGAACAACTGCTCCAATTTATCATGGTTTGCCTTCTAATCTTCTCAATTCTATTCAGATGCCATCATCAGAGGGATTCTGGGCAAATACTCAGCCCCCTTTTTGA 903 0.4518 MDRGHSLPPPFHTTRNFPQHQFHPFPQNKEDEQSGSSSNVLKRDREENNNNNNNNSDEGKEATGGSGEAELSRRARGRPSGSKNKPKPPIIITRDSANALRTHVMEVADGCNIIESVSNFARIRQRGVCIMSGTGSVTNVTLRQPGSSGGVVTLHGSFEILSVSGSFLPPPAPPSASSGLTIYLAGGQGQVVGGSVVGTLLASGSVVIMAASFSNAAYERLPLEDEDSSLPLQGGGGSIIGSPGASQVGQYHHQQQQQLQSQGFGDGTTAPIYHGLPSNLLNSIQMPSSEGFWANTQPPF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1310 300 PIRSF ESCAROLA 12 300 IPR014476 GO:0003680
Lan6g1310 300 CDD DUF296 101 168 IPR005175 -
Lan6g1310 300 MobiDBLite consensus disorder prediction 243 267 - -
Lan6g1310 300 MobiDBLite consensus disorder prediction 1 92 - -
Lan6g1310 300 Gene3D - 100 231 - -
Lan6g1310 300 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 215 IPR005175 -
Lan6g1310 300 ProSiteProfiles PPC domain profile profile. 97 236 IPR005175 -
Lan6g1310 300 MobiDBLite consensus disorder prediction 36 51 - -
Lan6g1310 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 300 IPR014476 GO:0003680
Lan6g1310 300 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 229 - -
Lan6g1310 300 MobiDBLite consensus disorder prediction 232 268 - -
Lan6g1310 300 MobiDBLite consensus disorder prediction 12 35 - -
Lan6g1310 300 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1310 Lan-Chr6 14210615 14211517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1310 6 300 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 50.459 1.49e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1310 - - qsu:112016192 351.673