Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1298 ATGGTGAGGGGAAAGACTCAGATGAAGCGCATCGAAAATGAGACAAGTAGGCAAGTAACTTTCTCAAAAAGAAGAAATGGGTTGCTTAAGAAAGCTTTTGAGCTTTCAGTGCTGTGTGATGCTGAAGTGGCTCTCATGGTTTTCTCTACAAGAGGAAAGCTCTATGAGTTCTCCAGTTCTAGTATAAACAAAACGGTCGAGCGCTATCAAAAGAAAGTCAAGGACTTGAGTCACAACACCAACGGAATTCAAGAAAATACACAGCACGTAATGGAAGGTGATATCAGCATGGCAAAGAAGATCGAGCACCTAGAAGTTTCGAAAAGGATGCTTTTGGGAGAAGGATTGGGTACATGCTGTATTAATGACTTACAACAGCTAGAGAAGCAGCTAGAACGAAGCTTAAACAAGATTAGGGCAAAGAAGAGTCAATTGTTCAAGGAGAAAATTGAGAAGCTAAGGGAAGAGGAGAAATGCTTACTTGACGAGAATAGACGCTTACAGGAGCAGTGTAAGATTGAAAAACAACAGTCTTTAAGTAAGCAAGACCTCGAACTCGTCGGAGAAATAAGAAGTGAAGAAGAGGTGGAGACGGAGTTGTTCATAGGACCACCAGAGAGACGAAGTTGA 630 0.4175 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALMVFSTRGKLYEFSSSSINKTVERYQKKVKDLSHNTNGIQENTQHVMEGDISMAKKIEHLEVSKRMLLGEGLGTCCINDLQQLEKQLERSLNKIRAKKSQLFKEKIEKLREEEKCLLDENRRLQEQCKIEKQQSLSKQDLELVGEIRSEEEVETELFIGPPERRS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1298 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan6g1298 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 Coils Coil 121 177 - -
Lan6g1298 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Lan6g1298 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 Pfam K-box region 94 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan6g1298 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan6g1298 209 Coils Coil 66 86 - -
Lan6g1298 209 PANTHER MADS-BOX PROTEIN SOC1 1 205 - -
Lan6g1298 209 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Lan6g1298 209 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Lan6g1298 209 PANTHER MADS BOX PROTEIN 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1298 Lan-Chr6 13786660 13804675 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1298 1 208 MADS-box Gene Family AT4G22950 58.768 2.80e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan6g1298 K-box 4.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1298 - - gmx:100805260 289.656