Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1290 ATGAACATTACCACACAATCATCAAATAAACCAGAATACCATTCACCTTCACCATTCGAAACGAGTTCCTCTACCTCTAACCCTCTTCAAAGCGATGAACAAGTGATATTATTAGCATCAGCGAGGCCAAAGAAGCGTGCAGGAAGGGGAAAACTCAAAGAAACGAGGCACCCCATATACCGAGGAGTGCGAAGAAGGAACAACAAGTGGGTTTGTGAAGTACGTGTTCCCAAAAAATCCACAAGGATATGGTTAGGAACATACCCTACACCTGAAATGGCAGCGAGAGCACACGATGTTGCAGTTCTCACTCTTAAGGGTAACTCTGCATGCTTAAACTTCGCTGACTCAAGGTGGCGGCTGCCACTGCCGAAAACCACCGACGCGGAGGAGATAAGAAGAGTTGCGGCAAAAGCTGCAGAGTCATTTCGGGTTGAAGAAAAAGAGAACTATGAGCAGAAAAGTGTGAATGATGTTACTGAATATGAAGTTTGTAGTGGTAATAACGTTGAGGTTGGGATTATGGAGGATATAAAGAAGGATGATGAGAGTTTTCATGGGTTGTGTTTTGATGAAGGTGGAAGTTTTTCACCATTTGAGGATATTGAAGAATGGTTTCAGAGTATGGTGGATGAGCCTTTACGATCTCCTTCTCCTTTTGATGTGAGACATGGTTACCAGAATGAATGGTGTGATTGGTATGTAGATGCTGAAGTGTCGTTGTGGAACTTTGCCACGTGA 741 0.4359 MNITTQSSNKPEYHSPSPFETSSSTSNPLQSDEQVILLASARPKKRAGRGKLKETRHPIYRGVRRRNNKWVCEVRVPKKSTRIWLGTYPTPEMAARAHDVAVLTLKGNSACLNFADSRWRLPLPKTTDAEEIRRVAAKAAESFRVEEKENYEQKSVNDVTEYEVCSGNNVEVGIMEDIKKDDESFHGLCFDEGGSFSPFEDIEEWFQSMVDEPLRSPSPFDVRHGYQNEWCDWYVDAEVSLWNFAT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1290 246 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Lan6g1290 246 Gene3D AP2/ERF domain 59 116 IPR036955 GO:0003700|GO:0006355
Lan6g1290 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 245 IPR045277 GO:0003700
Lan6g1290 246 ProSiteProfiles AP2/ERF domain profile. 59 115 IPR001471 GO:0003700|GO:0006355
Lan6g1290 246 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Lan6g1290 246 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677
Lan6g1290 246 SMART rav1_2 59 121 IPR001471 GO:0003700|GO:0006355
Lan6g1290 246 MobiDBLite consensus disorder prediction 1 33 - -
Lan6g1290 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 6 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1290 Lan-Chr6 13573882 13575064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1290 36 217 AP2-EREBP Transcription Factor Family AT1G12610 49.735 4.02e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g1290 AP2 6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1290 - - gmx:100795696 230.335