Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1286 ATGGATGGGAGAGAAGCTATGGCATTCTCTGGTGGGTCAGGTTCATATTACATACATAGAGGAGGGGTTGCAGGGTCTGGTGGGGGGTTTCCGGCGGCCGCACCCCCTCCTGGTTTTAGACCTTTGTCAAACACTGGCATTCAAACTCAGTCAATTGCAATGACTGGTGTTCGTTCTTCTGCTTCTACATTTTCAACTGTAGAGCCTCAAACCCGTCCTGTTTTTAGTCATGATAGCGTTAGCATCGGTGGTGGCGTGTCTTCTGGTGGGGTACCTCCCCCTCCTCCTTCTTCAGGTGATCCTGTGAAGAAGAAAAGAGGGAGACCCCGGAAATATGCTCCTACTGATGGAGCTGTTTCTTTGAAACTTTCTCCAATTTCTGGTGACGCTAATTGTACACCTGGTTCAATCACACCTTCGGAGAAAAAAGGTAGAGGGCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCATCTCTAGGTGAATGGATGAACAGTTCAGCAGGGCAGGCTTTTTCACCTCATGTTATCTCCATTGGAGTTGGGGAGGACATTGTAGCAAAGTTATTGTTGTTATCACAGCAGAGACCAAGGGCACTGTGCATCTTATCGGGCACTGGGACAGTTTCTTCCGTTACTCTGCGGCAGCCTGCTTCTACCAATGCCAGCGTAACTTTTGAGGGCCGATTCCAAATATTATGCTTGTCAGGTTCCTACATGGTTGCTGAAGATGGTGCACCGTCCAATAGAAAAGGTGGCATAAGTGCCTCCCTTTCTAGCCCTGATGGTCATGTTATTGGTGGCAGTGTTTCTGTGCTTATTGCTGGGAGCCCAGTGCAGGTGGTAGTGTGCAGTTTCCTATATGGTGGTAAGAGGACTAAGCAAGAGACTACTACCAAAGAAGACGGTAGTTCTGAGCCTCAAGGTAGTGACAAGTTATCTTCTCCAGCCAGTGCTCCTCCACCTAGTCAAAACTACATCTCTTCTGCAACAGGCATGTTGCCTGGATCGCGAGCAGAAGATGTGAAAAGTGAACAACTGCATACTGGCATTGATTTAACGCGTGGGTGA 1071 0.4874 MDGREAMAFSGGSGSYYIHRGGVAGSGGGFPAAAPPPGFRPLSNTGIQTQSIAMTGVRSSASTFSTVEPQTRPVFSHDSVSIGGGVSSGGVPPPPPSSGDPVKKKRGRPRKYAPTDGAVSLKLSPISGDANCTPGSITPSEKKGRGRPPGSGRKQQLASLGEWMNSSAGQAFSPHVISIGVGEDIVAKLLLLSQQRPRALCILSGTGTVSSVTLRQPASTNASVTFEGRFQILCLSGSYMVAEDGAPSNRKGGISASLSSPDGHVIGGSVSVLIAGSPVQVVVCSFLYGGKRTKQETTTKEDGSSEPQGSDKLSSPASAPPPSQNYISSATGMLPGSRAEDVKSEQLHTGIDLTRG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1286 356 SMART AT_hook_2 142 154 IPR017956 GO:0003677
Lan6g1286 356 SMART AT_hook_2 103 115 IPR017956 GO:0003677
Lan6g1286 356 CDD DUF296 174 286 IPR005175 -
Lan6g1286 356 MobiDBLite consensus disorder prediction 293 356 - -
Lan6g1286 356 MobiDBLite consensus disorder prediction 63 83 - -
Lan6g1286 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 286 IPR005175 -
Lan6g1286 356 Gene3D - 174 302 - -
Lan6g1286 356 MobiDBLite consensus disorder prediction 63 158 - -
Lan6g1286 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 288 - -
Lan6g1286 356 MobiDBLite consensus disorder prediction 308 332 - -
Lan6g1286 356 MobiDBLite consensus disorder prediction 25 45 - -
Lan6g1286 356 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 356 - -
Lan6g1286 356 ProSiteProfiles PPC domain profile profile. 169 310 IPR005175 -
Lan6g1286 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 356 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1286 Lan-Chr6 13460695 13464393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1286 1 356 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.593 1.03e-89 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1286 - - gmx:100813888 416.387