Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1278 ATGGCGACGACAGGGTCACCGAATCACCGTACCGTTGACGCCGACATCGATCCGACACCGCTCCTCTCCAGTTCCGGCGGTTCCTCCGACGAATCCAACTCCAGCCGCCGCCGGCAAGGGTTACGTCAAGCGGCACGGTTCCTCCGTCAAGCGAGTGGCCAGAGGATGATGCGAGAGCCGTCTATGGTGGTGAGAGAAACGGCGGCGGAGCAATTGGAGGAGCGGCAGAGCGATTGGGCTTATTCGAAGCCGGTGGTGGTCCTCGATATTCTCTGGAATTTCGCGTTCGTCGTTGCTGTTGCTACCGTGTTGGTTTTGAGTGTGATTGAAACTCCGATCATGCCTTTGAGGTTGTGGCTTGTTGGTTATGCTCTGCAATGCGTGGTTCATGTGGTTTGTGTTTGTGTTGAGTTTCGGAGGAGGAGAAGGAACCAGAGGGAAGGGTCCAACAATGCTGCGGCGGTGGTGCAGGACGGTGTTGGAGGAAGTGATTTGAGCTCTGGTTCTATTGAAGGCTCTGGTTCTGGACAATATGGGTTGTTGTCTCAATTGGATGAAGAGGGTACAAGTATGGCGAAGCATTTGGAATCAGCCAACACAATGTTTTCATTTATTTGGTGGGTCATTGGATTCTATTGGGTTTCAGCCGGTGGCCAAGGTTTGGCTCAAGATTCTCCTCTGCTTTACTGGTTATGCATAGTCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTGGCCTGCATCATTGGCATTGCCGTATGCTGTTGCCTTCCATGCATCATTGCACTTCTGTATGCAGTTGCAGACCAGGATGGGGCATCAAAAGAAGACATTGAGCAGTTATCAAAATTCAAATTCCGAAGAATTGAAAATGGTGAGAAACTTGCTGGTAATACCGAAGGATCTGCTGGAGGAATAATGACTGAATGTGTGGTTGATTCACCTATTGAACATGTTCTTTCTGATGAAGATGCGGAATGTTGCATCTGTCTTTCAGCATATGATGATGGGATTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTACCTGCGTGGACAAATGGCTCTATATTAATGCTACTTGCCCCCTCTGCAAATATAACATATTAAAAAGTACCAGCCATGGTCACGAGGAAGTGTAG 1161 0.4841 MATTGSPNHRTVDADIDPTPLLSSSGGSSDESNSSRRRQGLRQAARFLRQASGQRMMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAVATVLVLSVIETPIMPLRLWLVGYALQCVVHVVCVCVEFRRRRRNQREGSNNAAAVVQDGVGGSDLSSGSIEGSGSGQYGLLSQLDEEGTSMAKHLESANTMFSFIWWVIGFYWVSAGGQGLAQDSPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQDGASKEDIEQLSKFKFRRIENGEKLAGNTEGSAGGIMTECVVDSPIEHVLSDEDAECCICLSAYDDGIELRQLPCGHHFHCTCVDKWLYINATCPLCKYNILKSTSHGHEEV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1278 386 MobiDBLite consensus disorder prediction 1 41 - -
Lan6g1278 386 PANTHER TARGET OF ERK KINASE MPK-1 3 386 - -
Lan6g1278 386 SMART ring_2 331 371 IPR001841 -
Lan6g1278 386 MobiDBLite consensus disorder prediction 21 40 - -
Lan6g1278 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 379 IPR013083 -
Lan6g1278 386 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Lan6g1278 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 386 - -
Lan6g1278 386 CDD RING-H2_RNF111_like 330 374 - -
Lan6g1278 386 Pfam Ring finger domain 330 372 IPR001841 -
Lan6g1278 386 SUPERFAMILY RING/U-box 321 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1278 Lan-Chr6 13354310 13362456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1278 19 381 C3H Transcription Factor Family AT1G68070 49.185 1.72e-116 340