Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1272 ATGTGGTCGTCAATCATAATTTCACAACGGCGTAGAACATTCCAGAACCTTCTATTCTCCTTCACCCTCATCCGAAACATGGGTGGAGGACCACGCACTTTCCCCGGCGGAGTAACCAAATGGAAATGGAAGCGAATGCACGAAAAACGTGCCCGAGACAAAGAACGAAGACTCCTCGACCAAGAGAAACAGCTTTACGAAGCTCGTATTCGTTCTCACGTTCGATCCAATCTCTCACCACCGCAATCGCCGCCTCACCACCTTTCTTCCTCCGCCGCTGCCCCCACTCACGGCCCTATGTCCCCTCACGACCATGTCAAGGCTCTTGCTGATCGATTCATGAAGGAAGGTGCTGAAGATCTCTGGAATAACGATGACGGTCCGGTGAATTCACTGTCTACGGTCACGCCTCCTCCTCTGCGAGGTGTGAGTAGTACGCGCCACGGTTCTATTTCATCGCCGGTGGATTTGAGGAAACTGATTCAGGAAGGTTCGAACTCGAATTCCATAAATTCGATGAATTCGTTGAATTCGAGTGGTAATTATAGGCAGACTAGGGGTTTTTCGGTGGTTAGGGATGTGAGGAGTAAGAGAGTTGTGCCAGGTGCGAAGAAGAGATTTTGGAGAAATGATACCGATACCGATACAGATAGCGAGATTGAGAGTGAAGGTGAAGAAAGTGAGAGGGATTTGAAGAAGATGGGAAGTAGTGCTGCTTTGGGGAAATATGATGTGAAGAGGGAGAGGAGAGTGATACCAAAGTCATATGATGAAGAGAGTGATTTTAAGGAGAAGGTTGAGTTGATTAAGTATGAACTTAACAAAAGGAAATTAGAACAGAGTGAAGAGCGAAAGCATGAAGAAGAAACCGTCTTGACTCAGAAAAGATTCGATGAGTGCGGTATATCACCATTGACAGTAAAGGCACTTTCTTCGGCTTCTTATATTCATATGACCCAGGTACAAGAAGCTAGCCTTCCTATTTGCCTTGAAGGTAAGGATGTTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTAGCAAAACATCTCCACGTGTGCCTCCAATACTTGTTCTTATCCTCTGCTCTACTAGAGAGCTTGCGAGTCAAATTGCTGCGGAAGCAAAGGTCTTGCTCAAATATCATGATGGCATTGGGGTACAAACTCTAGTAGGAGGTGTACGATTTAAACTCGACCAAAAGCGCCTTGAGTCAGATCCATGCCAGATACTTGTTGCTACTCCTGGTAGGTTGCTAGATCATATTGAGAACAAATCTGGAATATCCTTGCGATTAATGGGCTTGCAGATGCTTGTACTAGATGAAGCTGATCATTTACTGGACCTGGGGTTTCGGAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGTTGTTTTCTGCAACCATGCCGAAGGAGGTCCGTCGTGTATCTCAGCTTGTTTTGAGAAGAGAACACACATATGTTGATACAGTTGGGATGGGTTGTGTGGAAACTCCTCTGAAGGTAAAGCAATCTTACCTTATTGCTCCACATGAATCACATTTTCAACTAGTGTACCACATTCTGAAGGAGCATATCATGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTGACATCACTCACGCATAAACTTCTCCGGGAGATGAAAATGAATGTTAGGGAGATACATTCTCGAAAACCTCAGAGCTATCGGACTCGCATATCAGACGAGTTCAAGGAATCCAAACAACTGATTCTTGTATCATCTGATGTTTCATCACGTGGAATGCATTATCCTGATGTTACTTTAGTCATACAAGTAGGGATGCCTATTGACCGTGAACAATATATACATCGTCTTGGAAGAACAGGACGAGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAGTATTTTTTACATGAGATCAAGGACCTCCCTCTGGAGAAATTCAATTTTCCAGATATAGATCCACAGACAAATATTAAGGTTGAGGATTCAATGGCAAAGATTGATAGTGATATCAAAGAAGCAGCTTATCATTCTTGGCTCGGTTATTATAACTCAATCAGGGAAATTGGGAGGGAGAAGAGCACTGTATCTGATCTGGCAAACCGATTTTCCGAATCAATTGGTTTACAGAGGCCTCCTGCTCTCTTCCGAAAAACTGCACTAAAGATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGGTAA 2295 0.4362 MWSSIIISQRRRTFQNLLFSFTLIRNMGGGPRTFPGGVTKWKWKRMHEKRARDKERRLLDQEKQLYEARIRSHVRSNLSPPQSPPHHLSSSAAAPTHGPMSPHDHVKALADRFMKEGAEDLWNNDDGPVNSLSTVTPPPLRGVSSTRHGSISSPVDLRKLIQEGSNSNSINSMNSLNSSGNYRQTRGFSVVRDVRSKRVVPGAKKRFWRNDTDTDTDSEIESEGEESERDLKKMGSSAALGKYDVKRERRVIPKSYDEESDFKEKVELIKYELNKRKLEQSEERKHEEETVLTQKRFDECGISPLTVKALSSASYIHMTQVQEASLPICLEGKDVLVKAKTGTGKSAAFLLPAIETVLKAMSSKTSPRVPPILVLILCSTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKLDQKRLESDPCQILVATPGRLLDHIENKSGISLRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATMPKEVRRVSQLVLRREHTYVDTVGMGCVETPLKVKQSYLIAPHESHFQLVYHILKEHIMQTPDYKVIVFCITGMVTSLTHKLLREMKMNVREIHSRKPQSYRTRISDEFKESKQLILVSSDVSSRGMHYPDVTLVIQVGMPIDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLHEIKDLPLEKFNFPDIDPQTNIKVEDSMAKIDSDIKEAAYHSWLGYYNSIREIGREKSTVSDLANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1272 764 PANTHER RNA HELICASE 30 763 - -
Lan6g1272 764 Pfam DEAD/DEAH box helicase 319 497 IPR011545 GO:0003676|GO:0005524
Lan6g1272 764 Pfam Helicase conserved C-terminal domain 543 647 IPR001650 -
Lan6g1272 764 MobiDBLite consensus disorder prediction 75 96 - -
Lan6g1272 764 Coils Coil 44 64 - -
Lan6g1272 764 MobiDBLite consensus disorder prediction 126 151 - -
Lan6g1272 764 MobiDBLite consensus disorder prediction 208 235 - -
Lan6g1272 764 SMART helicmild6 567 648 IPR001650 -
Lan6g1272 764 MobiDBLite consensus disorder prediction 121 151 - -
Lan6g1272 764 MobiDBLite consensus disorder prediction 75 104 - -
Lan6g1272 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 543 693 IPR001650 -
Lan6g1272 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 509 IPR014001 -
Lan6g1272 764 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 30 763 - -
Lan6g1272 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 667 IPR027417 -
Lan6g1272 764 CDD SF2_C_DEAD 524 657 - -
Lan6g1272 764 Gene3D - 519 743 IPR027417 -
Lan6g1272 764 Gene3D - 258 510 IPR027417 -
Lan6g1272 764 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 295 323 IPR014014 GO:0003724
Lan6g1272 764 SMART ultradead3 314 527 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1272 Lan-Chr6 13279865 13284568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1272 302 672 Eukaryotic Initiation Factors Gene Family AT5G11200 28.846 9.21e-40 151