Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1270 ATGGCCTTTAGTGGAACCCAACAAAAATGCAAGGCTTGTGATAAAGTTGTTCACTTTGTGGAGTCAGTTTCTGCTGATGGTATTTCTTATCACAAGAATTGTTTCAGATGTAGCCATTGCAATGGACTCCTAGCAATGAGCAACTATTCATCCTTGGATGGAACTTTGTACTGCAAGCCTCACTTTGAACAGGTTTACAAGGAAACTGGCATCAAGAAACCCCAGTCATCTGCAAAGCCTCCAAAGGAGCTGAATAAGACAGCTAGCAAACTCTCAGCCTTCTTCTCTGGTACTCAAGAGAAATGTTCAACTTGCAAGAAAACTGTATATCCATTGGAAAAGTTGACTGTGGAAGGTGAGTTCTACCACAAATCATGCTTTAGGTGTACACATGGAGGATGCTTCCTAACTCCTTCAACCTATGCTGCACTTGATGGATTCCTTTATTGCAAGCCTCACTTCTCTCAGCTTTTCAAGGAGAAGGGAAGCTATAGTTATCTCTCCAAGACAGCTTCAATGAAGAAAACTGAACAGCAACAAGCAGAGACAGCATCAGATTCAGAACCAAAGGAAACAACAAATGATGAACCAGAGGCTGTGGTCACACAAGAGCAGTAA 618 0.4207 MAFSGTQQKCKACDKVVHFVESVSADGISYHKNCFRCSHCNGLLAMSNYSSLDGTLYCKPHFEQVYKETGIKKPQSSAKPPKELNKTASKLSAFFSGTQEKCSTCKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLTPSTYAALDGFLYCKPHFSQLFKEKGSYSYLSKTASMKKTEQQQAETASDSEPKETTNDEPEAVVTQEQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1270 205 MobiDBLite consensus disorder prediction 175 205 - -
Lan6g1270 205 Pfam LIM domain 10 64 IPR001781 -
Lan6g1270 205 Pfam LIM domain 102 157 IPR001781 -
Lan6g1270 205 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lan6g1270 205 Gene3D Cysteine Rich Protein 4 72 - -
Lan6g1270 205 Gene3D Cysteine Rich Protein 96 166 - -
Lan6g1270 205 PANTHER OS06G0237300 PROTEIN 1 198 IPR045268 GO:0051015
Lan6g1270 205 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 198 - -
Lan6g1270 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 71 - -
Lan6g1270 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lan6g1270 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 166 - -
Lan6g1270 205 ProSiteProfiles LIM domain profile. 100 160 IPR001781 -
Lan6g1270 205 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lan6g1270 205 SMART lim_4 9 61 IPR001781 -
Lan6g1270 205 SMART lim_4 101 153 IPR001781 -
Lan6g1270 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 94 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1270 Lan-Chr6 13238764 13241234 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan6g1270 LIM 7.8e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1270 - K24413 gmx:100499865 336.265