Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1262 ATGGAGATGGTTCCAGAGAACATGAAGAAACAACTTTCTTTGGTTGTGAGGAGCATACAGTGGATATATGCAATATTTTGGTCTGGCTCAGCTACCAAACCTGGGGTCTTGAGCTGGGGTGAAGGATATTACAATGGAGACATTAAGACTAGAAAAGCAAATCAAGGAGTAGAACTTAATTCTGATGAAATAGGCTTGCAGAGAAGTGAGCAATTGAGAGAGCTATTCAGGTCTTTCAAAACTACAGAAGCAACAAAAAAGCCTTCAGCAACACTGTCCCCTGAAGATCTCACAGATACTGAGTGGTATTATTTGGTTTGCATGTCCTTTGTATTCAACAATGGAGAAGGGTTACCAGGAAGAACTCTAGAAAATGATCGACCTATTTGGCTGTGCAATGCCCATTCTACTGATTGTATACTTTTCGGTCGATCTCTGCTGGCTAAGGGTGCATCCATTCAGACAGTGGTGTGCTTTCCATTTATGGACGGGGTTATCGAGCTAGGTACAACTGATCTTGTGCAAGAAGATCTTAGTCTCATTCAACGGATCAGAACTTCTTTCTTGAATATTTTGGAATTCAATGCTCCAAAAAGAGATGGAGCCACATTGAACATGATAAATGAGGAAGAAGTTGCTGATAAAAATGCTTATAATGCTAAATCAACTGCAGAAGTAGGAAATGAAATTATCAACATAACCTCTCCTAATACTTCAGATGCATTACAAGGCAATCAACCAGCAGATGAAACATTGATAGTTGAAATGGTTAATGGTGGTAACCCTCGAGTACAAAGCTGGCAAGTTTCGGATGACGAATTAAGCAACTGCATCCATAATGCCATGAATTCTAGTGACTGTATTTCTCAAACTTTTGCTAGTCCTGAGAAGATTGCTTCTGTTGCCAATGGTGAAAATTGTAATGATCATTGTGCAATAAACCTTCAAAAGTTCAATAACCCGGAAATGACTTTAGTGGATCCTCAAAGAGATGATTGGCATTATCAGAGTGTTCTTTCAACCCTTCTAAAAAGCTCAGACCAGTTAACTATGGGAACACATTTCCAAAATTTTCATCAGGTTTCAAGCTTTGTCAGTTGGAAGAAAGCAGGGCCAACAGATTGCCAAAGGCCAAGAGCGCGAAACTCGAAAAGCTTATTGAAGAAGGTATTGTTTGAAGTTCCTCGGATGCATTTGGAGGGGTTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAATGAGACCAGAGGTAGATGGAAATGGCATGAACCATGTTTTGTCAGAAAGAAGGAGAAGAGCGAAACTAAATGAAAGGTTTTTAACCCTTAGATCAATGGTCCCTTCAACTAGTAAGGATGACAAAGTCTCAATACTTGATGATGCAATAGACTACCTCCGAAAGCTCGAGAAAAGGTTAAGAGAGTTGGAAGCTCAAAGGGAGATAATAGATATAGAGACTAGAACTAAAAGGTCACCTCAAGATATGGTGGAGAGGACTTCTGATAATTATTTTAACAAAACTGATAACGGCAAGAAGCCGGTCGTAAAAAAGAGGAAGGTTTGTGATATTGATGCGGCTCGAGTAGAGATCAATGCAGATGCTCTTAATGGTAGTTCTACTAATGATGTTACTGTCACTGTGAGTGGCAAGGAAGTTGTAATTGAGTTGAAGTGTCCTTCAACAGAAGGAAGGGTGCTAAAAATTATGGAAGCAATTAGCTCTCTCAATTTAGATTTCAATTCAGTTCAGTCAACAGAATCTGATGGAACTCTTTATATGACCATTAAATCTAAGCTAAAAGGACCAACTATTGTATCAGCAAAAAAGATCAAACAAACACTCCAAAGAGTGGCTTCAAAGTGTTGA 1872 0.3921 MEMVPENMKKQLSLVVRSIQWIYAIFWSGSATKPGVLSWGEGYYNGDIKTRKANQGVELNSDEIGLQRSEQLRELFRSFKTTEATKKPSATLSPEDLTDTEWYYLVCMSFVFNNGEGLPGRTLENDRPIWLCNAHSTDCILFGRSLLAKGASIQTVVCFPFMDGVIELGTTDLVQEDLSLIQRIRTSFLNILEFNAPKRDGATLNMINEEEVADKNAYNAKSTAEVGNEIINITSPNTSDALQGNQPADETLIVEMVNGGNPRVQSWQVSDDELSNCIHNAMNSSDCISQTFASPEKIASVANGENCNDHCAINLQKFNNPEMTLVDPQRDDWHYQSVLSTLLKSSDQLTMGTHFQNFHQVSSFVSWKKAGPTDCQRPRARNSKSLLKKVLFEVPRMHLEGLLESQEENDYKEGMRPEVDGNGMNHVLSERRRRAKLNERFLTLRSMVPSTSKDDKVSILDDAIDYLRKLEKRLRELEAQREIIDIETRTKRSPQDMVERTSDNYFNKTDNGKKPVVKKRKVCDIDAARVEINADALNGSSTNDVTVTVSGKEVVIELKCPSTEGRVLKIMEAISSLNLDFNSVQSTESDGTLYMTIKSKLKGPTIVSAKKIKQTLQRVASKC* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1262 623 Coils Coil 460 487 - -
Lan6g1262 623 SMART finulus 427 476 IPR011598 GO:0046983
Lan6g1262 623 PANTHER TRANSCRIPTION FACTOR EGL1 3 619 - -
Lan6g1262 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 188 IPR025610 -
Lan6g1262 623 Pfam Helix-loop-helix DNA-binding domain 425 471 IPR011598 GO:0046983
Lan6g1262 623 Gene3D - 420 486 IPR036638 GO:0046983
Lan6g1262 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 424 485 IPR036638 GO:0046983
Lan6g1262 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 421 470 IPR011598 GO:0046983
Lan6g1262 623 PANTHER TRANSCRIPTION FACTOR TT8 3 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1262 Lan-Chr6 13043292 13047518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1262 4 623 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 44.817 3.95e-175 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g1262 bHLH-MYC_N 1.9e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1262 - - gmx:100808167 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0211 18 2089261 2094262 Lan6g1262 6 13043292 13047518 LSH