Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1238 ATGGAGTCCGCTGCTTTATCCCGCATAGGCCTCGCCGGCCTCGCCGTTATGGGTCAAAACCTAGCCCTCAACATCGCCGACAAGGGTTTCCCAATCTCCGTCTACAATCGCACCACTTCCAAGGTCGACGAGACCGTAGATCGTGCCCTTCGCGAGGGCACCCTGCCCTTAACTGGTCACTACACCCCCCGCGACTTCGTCCTCTCCCTAACCCGTCCCCGCTCCGTTATCCTCCTCGTCAAGGCCGGCGCCCCCGTCGACCAGACCATCGCCGCCCTCTCCGACCACTTGGAACCCGGCGACGCCATCATCGACGGCGGCAACGAGTGGTACGAGAACACCGAACGCCGTATCGAACAGGCGAAAGAGAAAGGGATCCTTTATTTAGGGATGGGTGTTTCTGGTGGTGAAGAAGGTGCTAGAAATGGACCCTCTCTTATGCCTGGTGGGTCCTACGAGGCTTATAGTAATGTTCAAGATATTTTGCATAAGATTGCTGCGCAAGTTAATGATGGACCTTGTGTTACTTACATAGGTGAGGGTGGTGCTGGTAATTTTGTTAAGATGGTTCATAATGGGATTGAGTATGGGGATATGCAACTTATTTCTGAGGCTTATGATGTTTTGAAGCATGTTGGGGGTTTGTCGAATTCCGAGCTTGCGGAGATTTTCGATGAGTGGAATAGAGGAGAGCTTGAGAGTTTTCTGATTGAGATTACTGCTGATATTTTTAAGGTTAAGGATCATGAGGGTGGGGATGGTTATTTGGTGGATAAGATTTTGGATAAGACAGGAATGAAGGGAACTGGGAAATGGACTGTTCAACAGGCGGCTGAGTTGTCGGTTGCGGCTCCGACAATTGCTGCTTCGTTGGATTGCAGGTATTTGAGTGGTTTGAAGGAGGAGAGGGAGAATGCCGCGAGTGTGCTGAAGGAGGCGGGGTTGAATGAGGAGGTTGGAGCTTTGAGGAGTGGGGTTGATAAGAAGAGGTTGATTGATGATGTTAGGCAAGCTTTGTATGCTTCTAAGATTTGTAGCTATGCTCAAGGGATGAATCTTTTGAGGGCCAAGAGTGTAGAGAAAGGGTGGGATTTGAATTTCGGAGAGTTGGCGAGGATTTGGAAAGGTGGGTGTATCATAAGAGCTGTGTTCTTGGATAGGATCAAGAAAGCTTATCAGAGGAATCCCAACTTGGCTAGTTTGATTGTGGACCCGGAATTCGCTAGGGAAATGGTGCAGAGGCAGGGAGCATGGAGAAGAGTTGTGGGGTTGGCTATATCATCTGGGATCAGCACGCCTGGGATGTGTGCCAGTCTTGCTTACTTTGATACATATAGGAGAGCAAGGCTTCCTGCTAACCTTGTTCAGGCTCAGAGGGATTTGTTTGGGGCTCACACTTATGAAAGAGTTGATCGCCCTGGTGCTTTCCATACCGAGTGGACAAAAATTGCTCGCCAGAGCGGTACTGCTGGAGTTGGAGCTTTCAATGGATGA 1494 0.5 MESAALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETVDRALREGTLPLTGHYTPRDFVLSLTRPRSVILLVKAGAPVDQTIAALSDHLEPGDAIIDGGNEWYENTERRIEQAKEKGILYLGMGVSGGEEGARNGPSLMPGGSYEAYSNVQDILHKIAAQVNDGPCVTYIGEGGAGNFVKMVHNGIEYGDMQLISEAYDVLKHVGGLSNSELAEIFDEWNRGELESFLIEITADIFKVKDHEGGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERENAASVLKEAGLNEEVGALRSGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEKGWDLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPNLASLIVDPEFAREMVQRQGAWRRVVGLAISSGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGAFHTEWTKIARQSGTAGVGAFNG* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1238 497 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 181 IPR036291 -
Lan6g1238 497 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 184 480 IPR006114 GO:0004616|GO:0006098
Lan6g1238 497 PRINTS 6-phosphogluconate dehydrogenase signature 7 30 IPR006183 GO:0004616
Lan6g1238 497 PRINTS 6-phosphogluconate dehydrogenase signature 72 101 IPR006183 GO:0004616
Lan6g1238 497 PRINTS 6-phosphogluconate dehydrogenase signature 125 150 IPR006183 GO:0004616
Lan6g1238 497 PRINTS 6-phosphogluconate dehydrogenase signature 173 201 IPR006183 GO:0004616
Lan6g1238 497 PRINTS 6-phosphogluconate dehydrogenase signature 256 283 IPR006183 GO:0004616
Lan6g1238 497 PRINTS 6-phosphogluconate dehydrogenase signature 370 392 IPR006183 GO:0004616
Lan6g1238 497 Gene3D - 186 448 IPR013328 GO:0016491
Lan6g1238 497 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 9 481 IPR006113 GO:0004616|GO:0006098
Lan6g1238 497 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 8 179 IPR006115 GO:0050661
Lan6g1238 497 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 1 490 IPR006183 GO:0004616
Lan6g1238 497 PIRSF 6PGD 1 488 IPR006113 GO:0004616|GO:0006098
Lan6g1238 497 Gene3D - 5 185 - -
Lan6g1238 497 SMART 6PGD_2 184 481 IPR006114 GO:0004616|GO:0006098
Lan6g1238 497 Gene3D - 449 482 - -
Lan6g1238 497 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 3, CHLOROPLASTIC 1 490 - -
Lan6g1238 497 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 182 483 IPR008927 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1238 Lan-Chr6 12637863 12639692 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1238 K00033 - gmx:100803740 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1185 17 20067088 20069780 Lan6g1238 6 12637863 12639692 LSH