Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1235 ATGGCTACACCTTTCATCAAACACACTCACCACTTCAACCACACCAAACTTCTCATGAAGGATCCATATCCGTATCCAAGAGTGATACGAATACGTGTCACCGATGTCGACGCCACGGACTCTTCCGGTGACGACGAAGAAGAAGCATTGGTGTCTTTCACGCGCCGCCGTGTGAAAAACTTCGTTAATGAAATTACAATCACTGAGACTTGTTCTATTGAAAACAAAGGCAGCAAAGTTAGGAAGAGAAGTAGGGCAAAGTCAAGAATCTCGGGTGAGGCTCCGGTGAAGTGCCGTCGGAAAGTGGAAACGTTCCCCGGCGAGAAGAAGTTCCGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCCGCCGAGATAAGAGACCCTTTACGGCGGAGAAGGTTGTGGTTGGGTACTTACGACACCGCTGAAGAAGCTGCTATGGTGTATGACAACGCTGCCATTCAGTTACGTGGCGCTGACGCGCTCACCAATTTCATAACACTGCCGGGGAATAAAAACTCCGATTATAATTCCGGCGAAGAGTCTCCAAACAACAACAACAACAAAGACTCGTTTTCACCAACTTCTGTTCTTCAATGTTCTTCCTCATCTGAAGAAGTTAACTCTGTTGTATCTGTAACTACCAGAAACGATGTCGTTGCTGAACAAGCGTGTGAAACTCAATCACGTGACGAGAATGAATATTCGTGCATGTCGGGGAATTTATTAAGTGAGGAAGTTTCAGGTGATACATTATTCAAATCTGAGTCAATATTTCCAAGCAATGAAATGTTTGATTTTGATAACATGTTTCCAGAACCTAGTGAAATGTTTGATAGCAACATGTTCAATGATGATGATTTCTCATGTGGGTTTCTCACTTCTAGTGACAATTTGGATTATGGTTTCACAAGTTGTTGGAATAGAGATTATGATAATTTCCAAGATATTGGAGATTTGTTTGTTACGGATACCCTCTTGGCTCGGTGA 993 0.4401 MATPFIKHTHHFNHTKLLMKDPYPYPRVIRIRVTDVDATDSSGDDEEEALVSFTRRRVKNFVNEITITETCSIENKGSKVRKRSRAKSRISGEAPVKCRRKVETFPGEKKFRGVRQRPWGKWAAEIRDPLRRRRLWLGTYDTAEEAAMVYDNAAIQLRGADALTNFITLPGNKNSDYNSGEESPNNNNNKDSFSPTSVLQCSSSSEEVNSVVSVTTRNDVVAEQACETQSRDENEYSCMSGNLLSEEVSGDTLFKSESIFPSNEMFDFDNMFPEPSEMFDSNMFNDDDFSCGFLTSSDNLDYGFTSCWNRDYDNFQDIGDLFVTDTLLAR* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1235 330 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Lan6g1235 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 5 325 - -
Lan6g1235 330 CDD AP2 109 166 IPR001471 GO:0003700|GO:0006355
Lan6g1235 330 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Lan6g1235 330 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Lan6g1235 330 MobiDBLite consensus disorder prediction 174 198 - -
Lan6g1235 330 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Lan6g1235 330 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Lan6g1235 330 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 325 - -
Lan6g1235 330 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Lan6g1235 330 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1235 Lan-Chr6 12597643 12599539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1235 1 329 AP2-EREBP Transcription Factor Family AT4G23750 38.227 3.72e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan6g1235 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1235 - - gmx:100813992 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0108 17 615965 617000 Lan6g1235 6 12597643 12599539 PCT
Lan6g0086 6 579921 581307 Lan6g1235 6 12597643 12599539 PCT