Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1229 ATGGCTGACATAATTGCCCAAATTCCCACCAAGAGAGCAAGGGGAAACAGAAAGGCACTGAAAGAGAAAATCCCATCAACTAGTGAGGCCAACATCTTAGCTGCTGCTAAGGTTTCTGAGTCCTCTGTAGCACCACTTTCGCTTCCCTCCGATGCGGCGAAGGAGAATTACAATGAAAGCAGCCTTTCTCATCCGAAGAAGGGAAAGGCTGCCTCGAAGAAACAGCAACAATCTTTTGAGAAAGACTTGCTTGAAATGCAGGAGAAGCTTCAACAATTGCGTCTCGAGAAGGAGAAGACTGAAGAGCTATTGAAGGTTAAAGATGAAGCTTTGAAGCAGAAGGAGGAAGAGCTTGAATGCCGTGACCGCGAGCAGGAGAAGCTTCAGATTGAGCTCAAGAAGTTGCATAAGTTGAAGGAGTTCAAACCCACCATGAATTTGCCTGTGGTGAAAGACAAAGAACAAGAAAAGAAGGACAAGAAGAATGGGTGCTCTGAGACTAAAAGGCCTTCTACACCCTACATTTTATGGTGCAAAGAACAATGGAATGAGATTAAGAAAGAGAATCCAGAGGCAGAATTTAAGGAAATTTCAAACATGTTGGGGGCTAAATGGAAGACAGTGAGTGCAGAAGAAAAGAGGCCTTATGAAGAGAAGTACCATGCTGAGAGAGAAGTTTATTTGCAAGTAATGGCTAAGGAAAGGCGTGAGACTGAGGCAATGAAGCTTTTGGAAGAGGAACAGAAGAACAAAACTGCATTGGAACTGCTTGAACAATATATCCAGTACAAACAAGAGACAGAAAAAGAGACCAAGAAGAATAATAGGAAAGAGAAGGATCCATTGAAACCAAAGCATCCCATGTCAGCTTATTTCTTGTTCACGAATGATAGGAGGCCAGCTCTTCTTGCTGAGAACAAAAAGGTCTTGGAGGTTTCTAAGATCACAGCTGAAGAGTGGAAAAACATGACAGAGAAACAAAAGAAGCCTTATGAAGAGATTGCAAAGAAGAACAAGGAGAAATACATGCATGAAATGGAGGCATATAAACAGAAAAAAGATGAGGAGGCTGCAAATCTCATGAAGGAAGAAGAGGAGCATGTTAAACTTCAAAAACAGGAAGCCATGCAACTACTGAAGAAGAAGGAGAAAACTGAAAATCTGATCAAGAAAACAAAAAAGAACAACCAGAAGAAGAAGCAAAGCAAGGAAGATAAGAATTCTGATCCTAATAAGCCAAAGAGGCCTGCATCCTCATTCATCCTATTCAGCAAAGATTCAAGGAAAACTTTACAGGAGCAAAGACCAGGAGTTAGTACCTCTACCCTTAATGCACTGATTTCATTGAAGTGGAAGGAACTGAGTGAGGAAGAGAGAAAATTCTGGAATGGAAAAGCATCTGAAGCAATGGAAGCATACAAGAACGAATTGGAGAAATATAACGAGTTCATTGCTGCAACTGCAACCCAGGAGAGTAACATTGATGAATGA 1491 0.4138 MADIIAQIPTKRARGNRKALKEKIPSTSEANILAAAKVSESSVAPLSLPSDAAKENYNESSLSHPKKGKAASKKQQQSFEKDLLEMQEKLQQLRLEKEKTEELLKVKDEALKQKEEELECRDREQEKLQIELKKLHKLKEFKPTMNLPVVKDKEQEKKDKKNGCSETKRPSTPYILWCKEQWNEIKKENPEAEFKEISNMLGAKWKTVSAEEKRPYEEKYHAEREVYLQVMAKERRETEAMKLLEEEQKNKTALELLEQYIQYKQETEKETKKNNRKEKDPLKPKHPMSAYFLFTNDRRPALLAENKKVLEVSKITAEEWKNMTEKQKKPYEEIAKKNKEKYMHEMEAYKQKKDEEAANLMKEEEEHVKLQKQEAMQLLKKKEKTENLIKKTKKNNQKKKQSKEDKNSDPNKPKRPASSFILFSKDSRKTLQEQRPGVSTSTLNALISLKWKELSEEERKFWNGKASEAMEAYKNELEKYNEFIAATATQESNIDE* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1229 496 SUPERFAMILY HMG-box 157 232 IPR036910 -
Lan6g1229 496 Gene3D High mobility group box domain 162 243 IPR036910 -
Lan6g1229 496 Coils Coil 332 402 - -
Lan6g1229 496 MobiDBLite consensus disorder prediction 423 437 - -
Lan6g1229 496 MobiDBLite consensus disorder prediction 353 437 - -
Lan6g1229 496 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 284 350 IPR009071 -
Lan6g1229 496 MobiDBLite consensus disorder prediction 146 166 - -
Lan6g1229 496 MobiDBLite consensus disorder prediction 265 285 - -
Lan6g1229 496 CDD HMGB-UBF_HMG-box 168 232 - -
Lan6g1229 496 SMART hmgende2 166 236 IPR009071 -
Lan6g1229 496 SMART hmgende2 283 351 IPR009071 -
Lan6g1229 496 SMART hmgende2 412 482 IPR009071 -
Lan6g1229 496 Coils Coil 487 496 - -
Lan6g1229 496 SUPERFAMILY HMG-box 408 481 IPR036910 -
Lan6g1229 496 MobiDBLite consensus disorder prediction 1 22 - -
Lan6g1229 496 CDD HMGB-UBF_HMG-box 284 347 - -
Lan6g1229 496 MobiDBLite consensus disorder prediction 146 170 - -
Lan6g1229 496 Pfam HMG (high mobility group) box 167 232 IPR009071 -
Lan6g1229 496 Pfam HMG (high mobility group) box 284 350 IPR009071 -
Lan6g1229 496 Pfam HMG (high mobility group) box 413 481 IPR009071 -
Lan6g1229 496 MobiDBLite consensus disorder prediction 38 83 - -
Lan6g1229 496 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 490 IPR044601 GO:0003677
Lan6g1229 496 CDD HMG-box 413 478 - -
Lan6g1229 496 Coils Coil 76 131 - -
Lan6g1229 496 MobiDBLite consensus disorder prediction 353 412 - -
Lan6g1229 496 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 167 235 IPR009071 -
Lan6g1229 496 MobiDBLite consensus disorder prediction 265 289 - -
Lan6g1229 496 Gene3D High mobility group box domain 389 484 IPR036910 -
Lan6g1229 496 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 413 481 IPR009071 -
Lan6g1229 496 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 490 - -
Lan6g1229 496 Gene3D High mobility group box domain 267 360 IPR036910 -
Lan6g1229 496 SUPERFAMILY HMG-box 276 355 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan6g1229 HMG_box 9.7e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1229 K09273 - gmx:100783033 595.119