Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1213 ATGAACACGTGGACGGACCAAAATCAAAACCCCTCCGTCATGGACACATTTATAACCTCCTCCGACCTCTCTTCTCTTTGGCTGCCACCACCACACTCAGTCCCATCCAACACCACACCAGATCCAACCCGTGCACCACCGCCGCCGCCGCCGCCGCAAACTCTGTTCAATCAAGAGACACTGCAACACCGGCTGCAGTCACTTATTGAAGGCGCGAAAGAGAGTTGGACATACGCTATCTTCTGGCAATACGATTACTCACCAGGCTCTTCTCTCCTCGCTTGGGGTGACGGTTACTATAAAGGGGAAGAACACAAGAGGAATTTGAAAATCGTATCGCGTGACGAGCAAAATCATCGTAAGAAGGTTTTGAGAGAGCTCAATTCTCTGATTTCTGGTCCTTCAGGTTCAATTGATGATGCTATTGATGAGGAAGTTACGGATACGGAGTGGTTCTTTCTTATGTCGATGACTCAGTCGTATATCAATAGTGACAGTGTACCAGGAAAGGCTTTTTTCAATTCTAGTCCTGTTTGGGTCGCTGGTGCTGATCGGTTATCGGGATCAGGTTGTGAGCGATCGCGGCAGGGACAGGTTTTTGGATTACAGACTTTGGTTTGTATACCTACGCCAAATGGCGTGGTTGAGCTTGGTTCGACTGAGCTGATTTTACAAAACCCTGATTTGATGAATAAGGTGCAGGTTTTGTTTAATTTCAATAAAAATGTTTATGCTTGTTCGCTATTGCCGTTGAATGCTAATGTCGCGGATAAGGGTTTGAACAACCCTTGTTCCTCAGTTTGGCTCAGTGATCCGTCTGGTAGGATTGGAATTGAAGATTCTGTTAGTAGCGAGGGTAAGGTGAATATATCAACTGGTAAAAGTATGGCATTGCAGTTTGGAACCCCTGGTTCTAGCAGTTTAAATGAAAACATGAGTGCCATTGATGTTTCCAATAATGCGCAGCGGCGCCAGCAGCAGAACCAGGACCAGAACTTATTTTCAAGGGAATTGAACTTTTCGAGTTCGTTGAAGATGGAGTCTGGTGAGATTCTGAGATTTGGGGAGAGGAAGAAGAGCTCTTATGACAGTGTGGCGAATGGAAATTTGTTTTCAGGCCAGGCAGAGTCTGTTTTTGGTGAGGAGAACAAGAGGAGTTCCAATGTTTCCAGAAGCAACATTGACGATGGCATGCTTTCTTTCACTTCTGGTATGATCTTGGCAGCTTCGAATGTTAGGTCTGGTGGTGAAGGTGGTGGTGATTCTGATCATTCGGATCTTGAAGCTTCTGTGGTGAAGGAGGCAGATAGCAGAGTGGTGGAGCCAGAGAAACGACCAAGGAAAAGGGGGCGAAAGCCGGCGAATGGCAGAGAGGAGCCATTGAATCATGTTGAAGCTGAGAGGCAGAGAAGAGAGAAACTCAATCAGAGATTCTATGCACTTCGTGCAGTGGTTCCGAATGTGTCCAAAATGGACAAAGCATCGCTTCTTGGTGATGCTATATCTTACATCAATGATCTGAAGTCAAAGGTTCAAAGGGTAGAATCAGAGAAAGGTGAATTGGAGAAGCAGTTGGATCATGCAAAGAAGGAACTCGAGCTTGCAAGTAAGAATCCGGGGGCACCACCACCTCGGCCTGTTAAAGAGAGCAACCAGATTGGAAGCAAGCTGATTGATTTGGATATCGATGTAAAGATTGTTGGTTGGGATGTGATGATTCGGATCCAATGCAACAAGAAGAATCACCCTGCAGCGAGATTGATGGCAGCTCTGAAGGAGCTTGACTTGGATGTGCACCATGCCAGTGTCTCTGTAGTGAATGATTTGATGATCCAACAGGCGACAGTGAAAATGGGAGGCCGTTTTTACACACAGGAGCAGCTCCTGTTGGCACTATCCACTAAAGTTGGCTATGCAAAATAA 1923 0.4618 MNTWTDQNQNPSVMDTFITSSDLSSLWLPPPHSVPSNTTPDPTRAPPPPPPPQTLFNQETLQHRLQSLIEGAKESWTYAIFWQYDYSPGSSLLAWGDGYYKGEEHKRNLKIVSRDEQNHRKKVLRELNSLISGPSGSIDDAIDEEVTDTEWFFLMSMTQSYINSDSVPGKAFFNSSPVWVAGADRLSGSGCERSRQGQVFGLQTLVCIPTPNGVVELGSTELILQNPDLMNKVQVLFNFNKNVYACSLLPLNANVADKGLNNPCSSVWLSDPSGRIGIEDSVSSEGKVNISTGKSMALQFGTPGSSSLNENMSAIDVSNNAQRRQQQNQDQNLFSRELNFSSSLKMESGEILRFGERKKSSYDSVANGNLFSGQAESVFGEENKRSSNVSRSNIDDGMLSFTSGMILAASNVRSGGEGGGDSDHSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINDLKSKVQRVESEKGELEKQLDHAKKELELASKNPGAPPPRPVKESNQIGSKLIDLDIDVKIVGWDVMIRIQCNKKNHPAARLMAALKELDLDVHHASVSVVNDLMIQQATVKMGGRFYTQEQLLLALSTKVGYAK* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1213 640 Pfam Helix-loop-helix DNA-binding domain 462 507 IPR011598 GO:0046983
Lan6g1213 640 SMART finulus 464 513 IPR011598 GO:0046983
Lan6g1213 640 MobiDBLite consensus disorder prediction 24 53 - -
Lan6g1213 640 MobiDBLite consensus disorder prediction 419 468 - -
Lan6g1213 640 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 61 237 IPR025610 -
Lan6g1213 640 CDD bHLH_AtAIB_like 455 531 - -
Lan6g1213 640 Coils Coil 504 538 - -
Lan6g1213 640 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Lan6g1213 640 Gene3D - 450 537 IPR036638 GO:0046983
Lan6g1213 640 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 529 IPR036638 GO:0046983
Lan6g1213 640 MobiDBLite consensus disorder prediction 33 53 - -
Lan6g1213 640 MobiDBLite consensus disorder prediction 412 468 - -
Lan6g1213 640 PANTHER MYC 4 637 IPR045084 GO:0003700|GO:0006355
Lan6g1213 640 PANTHER TRANSCRIPTION FACTOR MYC2 4 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1213 Lan-Chr6 12254537 12257141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1213 1 637 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.149 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g1213 bHLH-MYC_N 1.6e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1213 K13422 - gmx:100790854 758.829