Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1210 ATGGAAGCAGAAGCAGAAGCGGAATCGGATTTCGTGATGAATGACATGCTCACATCCACTTATGATCAGGATCCCTTTGATGATGATAACAACAATGGTAATTTAGCTATTGAAGGGGAAAGGTGCGGAATATGCATGGATGTTGTTATTGACCGGGGAGTTCTGGATTGCTGCCAGCATTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTCTGTCCACTTTGCCAGAATGAGTTTCAGTTGATTACTTGTGTTCCAGTATATGATACCATTGGAAGCAATAAAGTTGAAGATGAGTCATACTTCAGGGATGATGACTGGTCTATTGAAGGGAAGAGTAACACCCTGTCATTTCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGTGGTGGCTGCAAAGTTCGAAGTGGATCAGCATCTATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAAGCACATCTGACAGTACGTGGTTATGCCCGAGATGTGTGGTTGGTGAAGTTTCTAAAGGAACAGACACTAATTCCATTGAGAGGACAGCTGTCGAATATAACCCAGAGAACAGTAACAGTAAATGTCTGGCTGAGGATTCTTTTTCAAGGAAAGTGTCTGTCTCTGTTGCTGATACTGGAGATACAGCTGTTGTTGTTTCGATGGTTGATGGGAATAAATGGATTCCTGCAACAAGCGAGAAAGACATGTTTCCTCTTGAAGTTGATGGGGATCCACTGAATGAATCACACATTTTAATGTCTGATACACATAATGAGCAGAAGGGGGCAAAGAAGACTACTACCACACCAGTCATGGAGGAACAGGAACTAGAACTGTGCTTATCCAACAATGTATCCGGTAGCCTAACTTTTAAATCCTTGGTGCATAATGATTTAAAAAAAAGTACTCATGGAGCAAAGGGTGAAAAAAGTAGCTTTGTTGGAAAGAAGTTATTGGATGAATCCCATGTCAAAACTAGTCCATCCAGAAATGAATCTGACATGGGTCTTCATCTTGGTTTGTCGGTGGGCTCTTTTTTATCTGTTGATAAAGCAGATGAGAACGAAACAAAAGATCAAGCAACTGTTATCCTGCACTCAAGTCCAGAAAAACCATTTTTGAAAGCGGATGGGAAAAATCAAGCAGTGGATATCCCACAGTTGAGTCCAGAAAAAACTTATTTGAAAGGACATGAAATTGAAACTGGTATTCATAAGGACAATGCCAGAGTGACTGCTAGAAAGAGAAAACATGTTGATTGCAGTTATGATCAAGTTCATATAAAAGTTGATGATGGAGATGCCAAGCCTGAACTCCTGGTTGAAATTTCACAAAAGAAAATTAGAGCTGCTGGTAGTCAAATGATCAGTGCTAATAACTTAGCTGATGCTCCTCTTTCAGACAATGCTAAACAACACCCTGCATTAAAACCTTCTCCATCAAGGGAAGTTGTTGCCTCAGATATATTGAATATAGTTAAAGGGACGAACAGGAGGGTTTCCAAGGGACGTGCTGGAACTGATGCTTGTGACAAGTTATCTGAAAAGAAAGAAAATATGGCTGGATTGAGGGTAAAGAAGATCATGAAGAGAGTTTCTGATGATGGAGAATCATCCTTGATGGTTCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATGCTCTATAAACTTCGAGGAAAACCATTTTGATACAAAGCTTCTTGCAGCATTTAGAGCTGCTATTGTAGGACCTAAAACTGAACCTGTAAATAAGTTATCTCCATCAGCTCTTAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAGGAAGATTTTTTCGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGCGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATCGAAACTTTAAAGTCAGTTCTTGATCTACTAAGAAAAAGTTCAGAGGACCCAGAATCAAAGCAAACTCCTGAGAGTCGGGCCAAGGATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCTCGAAAAGATGATGTCAAGCCTCTGTCTATACTTAAAACCAGTGCTAGCTCTGAGCAAACTAAACAAAACAACCCACCAGGAAAAGGATCAAACCCATTTCTTAATAACAATACTACTAAAGCAACAGAGGCAAATAATCTTTTGTCAAAAATCGGAATTTCTTCATCTGAAGGGAAGGTTAATAGACAGATTGTTAATGGCTCAGCTGGTGATAATTCAACTTCTGGTAAAGTACATGTTAGCAGTCATTCAGGAGTGAAATTGGTTTCTTCTTCAGCCGGTGCCAAAGTTGCGACAAAGGAGTTAGGCCTTAAATCAGATTCTACTAAGATTGATAAAAAGAAATGGGCCTTAGAGATTCTTGCAAGGAAAACAGCTGCTGCAAGCAAGAACACATCAAATGAAACTCAGGAAGACAATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAGTTACCAACTGATATGAGACCAGTATTGGCACCTTGTCGCCACAACAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGCCTGACTGAGCGCTTGTTGAGGAACACAAATTTGTCAGTCATTCGCCGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAAGATGTTGCTGACAGATCAAACAGCAAGCTTGTGTATATGAACCTCTGTTCCCAGGAGCTCTTGCATCGCACAAATAACACAAAATCCACTACAGTCAAAGATACAAATCCACCAGCCTCATCAGCAGAGCTTACTGATCAATCAGAACAAAATACTGATGATCATTCTAGTGACCCTGAAGTTGAGATAGCCCTGAAAAATGCTGGTCTATTGTCTGATTCGCCACCTAGCAGTCCACAAGTGAACAGAGAACTATGTAAAGATGACATGTCAGGGCCCGATAATATACTTGAACTGGATTCTCATCCTGAACTGGATATTTATGGTGATTTTGAATATGATCTGGAAGATGAAGATTACATTGGTATTACAAAGGTCTCAAACCCAAAACAAGAGGAAAGTGAGTCGAAAGTGAAACTGGTTTTCTCCACCATGAAATTGAAGTCAGATATTCCTTTGGAATGTGCGGTTGGTGAGGGCTCTGAAAACATTGAAGTGCCACAAGATGCCTCAAGCTCACCAAACTGTCACAATGTTGCAGTCCATATGGATTCCACGACCAATGTGGAGATTGGCCAGCCTTCTGTTTCTTCTGAGCTCCCACTCTGTGAGGGTTCTGTTGAGCCATTTGATTCAGAATTTGAAGAATTATATGGCCCCGACAAAGAACCACTTATCAAGAAATTTCCAGATGGTGAATCAAGAACATTATGTGGAGAGGGCAAGACAGAAGCTCTAGGTGAGGCCAATGACTGCCATAACAAAGAAAATGTGTCTGTTACTTCTATCACTGATAAATCTTGTAATGTATCTGAAACTGCTGAAAATGCCCCAAGGACAGAAGAGAAATCTGAGAAAAATGCCAAGCAATCTGGCTCTTTAAATCATGTAACTAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCACTTTGCAAGAGTGAAGTGATCACGGCTGAACAATACAGGTGGGCTGTTGCAAAAACAACCGAAAAGGTTATGAAGTATCATTCTAAAGCAAAGAATGCCAGTTTCCTCATTAAGGAGGGTGAGAAAGTGAAGAAACTTGCAGAGCAGTATGTTGAAGCTGCCCAACAGAATAAAAAGAATTGA 3906 0.4025 MEAEAEAESDFVMNDMLTSTYDQDPFDDDNNNGNLAIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDESYFRDDDWSIEGKSNTLSFPSYYIDENAVICLDGGGCKVRSGSASIEEDSGLDTSIACDSCDIWYHAFCVGFDTESTSDSTWLCPRCVVGEVSKGTDTNSIERTAVEYNPENSNSKCLAEDSFSRKVSVSVADTGDTAVVVSMVDGNKWIPATSEKDMFPLEVDGDPLNESHILMSDTHNEQKGAKKTTTTPVMEEQELELCLSNNVSGSLTFKSLVHNDLKKSTHGAKGEKSSFVGKKLLDESHVKTSPSRNESDMGLHLGLSVGSFLSVDKADENETKDQATVILHSSPEKPFLKADGKNQAVDIPQLSPEKTYLKGHEIETGIHKDNARVTARKRKHVDCSYDQVHIKVDDGDAKPELLVEISQKKIRAAGSQMISANNLADAPLSDNAKQHPALKPSPSREVVASDILNIVKGTNRRVSKGRAGTDACDKLSEKKENMAGLRVKKIMKRVSDDGESSLMVQNLRKEIREAVRNKCSINFEENHFDTKLLAAFRAAIVGPKTEPVNKLSPSALKAKKSMLQKGKVREHLTRKIFSTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSEDPESKQTPESRAKDPILSRLYLADTSVFPRKDDVKPLSILKTSASSEQTKQNNPPGKGSNPFLNNNTTKATEANNLLSKIGISSSEGKVNRQIVNGSAGDNSTSGKVHVSSHSGVKLVSSSAGAKVATKELGLKSDSTKIDKKKWALEILARKTAAASKNTSNETQEDNAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLSVIRRTADTELAVADAINIEKDVADRSNSKLVYMNLCSQELLHRTNNTKSTTVKDTNPPASSAELTDQSEQNTDDHSSDPEVEIALKNAGLLSDSPPSSPQVNRELCKDDMSGPDNILELDSHPELDIYGDFEYDLEDEDYIGITKVSNPKQEESESKVKLVFSTMKLKSDIPLECAVGEGSENIEVPQDASSSPNCHNVAVHMDSTTNVEIGQPSVSSELPLCEGSVEPFDSEFEELYGPDKEPLIKKFPDGESRTLCGEGKTEALGEANDCHNKENVSVTSITDKSCNVSETAENAPRTEEKSEKNAKQSGSLNHVTKKVEAYIKEHIRPLCKSEVITAEQYRWAVAKTTEKVMKYHSKAKNASFLIKEGEKVKKLAEQYVEAAQQNKKN* 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1210 1301 SMART PHD_3 140 192 IPR001965 -
Lan6g1210 1301 Pfam PHD-finger 156 192 IPR019787 -
Lan6g1210 1301 SMART ring_2 42 80 IPR001841 -
Lan6g1210 1301 SMART ring_2 132 191 IPR001841 -
Lan6g1210 1301 SUPERFAMILY FYVE/PHD zinc finger 157 197 IPR011011 -
Lan6g1210 1301 ProSiteProfiles Zinc finger PHD-type profile. 74 194 IPR019787 -
Lan6g1210 1301 MobiDBLite consensus disorder prediction 731 756 - -
Lan6g1210 1301 ProSiteProfiles Zinc finger RING-type profile. 42 81 IPR001841 -
Lan6g1210 1301 PANTHER RING FINGER PROTEIN 41, 151 112 1298 - -
Lan6g1210 1301 MobiDBLite consensus disorder prediction 686 701 - -
Lan6g1210 1301 SUPERFAMILY RING/U-box 41 87 - -
Lan6g1210 1301 Pfam Zinc finger, C3HC4 type (RING finger) 42 80 IPR018957 GO:0046872
Lan6g1210 1301 MobiDBLite consensus disorder prediction 686 705 - -
Lan6g1210 1301 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Lan6g1210 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 105 IPR013083 -
Lan6g1210 1301 MobiDBLite consensus disorder prediction 956 1029 - -
Lan6g1210 1301 PANTHER RING/U-BOX PROTEIN 112 1298 - -
Lan6g1210 1301 MobiDBLite consensus disorder prediction 956 977 - -
Lan6g1210 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 192 IPR013083 -
Lan6g1210 1301 MobiDBLite consensus disorder prediction 1200 1224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1210 Lan-Chr6 12221482 12235377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1210 42 104 C3H Transcription Factor Family AT3G58030 36.923 8.86e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan6g1210 PHD 2.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1210 - - gmx:100808102 1819.28