Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1205 ATGAATAATAATTATCAAGGGGCTCTCATGGGTATTCCACAAACTCCAAACCCTTCTCCTTCACATCTATATCCAAGGGAAATTCAGCTTAAACTTTACCAAGCTTTCATATTTTCAATCCCAATACTCTTCACAATTATTCTAGTTCTCTTGTTTTACTTATTCTACCTCAAGAGGAGGGCTTCATTTCTCTCATCCACTCCTCTTCACATACTTCCTAGGAGGTCCAATCCTCAAACTACATATCCTTATACTTCTTCGCCTTATCGTTTAGATCATCTCACGGTACAATTTCTGGACAAACTTCCAAGAGTTTTATGTGATGAGGATTTGAGAGCAAGGGATTCCTTATGTTGTGTTTGTCTTGGAGAATTTGAGCTGAAAGAAGAGCTGCTTCAGATTCCTTATTGCAAGCACGTGTTTCACATAGAATGTATACATAACTGGCTCCAATCAAACACTACATGCCCATTATGTAGATGTTCCATCATCACCACCAACACTACCAAGTTCCTTAATCCTGCACCATCTATTGATTCATTAGACCCACCACAACAAAGTGGTGTCATTTCTGGCTCTCCATCACACATCACATCATTGCCTCCTCAACTAGAAGATGAAGCAACTACTTCAAATATTTTCAGGGAATGA 651 0.3902 MNNNYQGALMGIPQTPNPSPSHLYPREIQLKLYQAFIFSIPILFTIILVLLFYLFYLKRRASFLSSTPLHILPRRSNPQTTYPYTSSPYRLDHLTVQFLDKLPRVLCDEDLRARDSLCCVCLGEFELKEELLQIPYCKHVFHIECIHNWLQSNTTCPLCRCSIITTNTTKFLNPAPSIDSLDPPQQSGVISGSPSHITSLPPQLEDEATTSNIFRE* 217
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1205 216 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Lan6g1205 216 MobiDBLite consensus disorder prediction 182 202 - -
Lan6g1205 216 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 12 171 - -
Lan6g1205 216 SMART ring_2 118 159 IPR001841 -
Lan6g1205 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 165 IPR013083 -
Lan6g1205 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 12 171 - -
Lan6g1205 216 SUPERFAMILY RING/U-box 96 166 - -
Lan6g1205 216 Pfam Ring finger domain 118 160 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan6g1205 Lan-Chr6 12155170 12158176 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1205 12 179 C3H Transcription Factor Family AT4G10150 40.230 1.08e-32 116
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1180 17 19996142 20000576 Lan6g1205 6 12155170 12158176 LSH
Lan18g0159 18 1315889 1318080 Lan6g1205 6 12155170 12158176 LSH